Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02677 ATGTCTCTCTCTTTTCTTCCTGTCTACTCTTCACATCACCTCTCCTCCTCTCTTTTCTTTCCTACACCACACCTTTCTCTCCTTTGTCTCCCGAAATTCTCAAATGCCCCAACTCCCCAATTTATTTTATGCTGCCGAAGGAACGCTTCATTTTCAGCCCGATGTGGGCCTGGAGTCCCCGATGGTGCTCAATATGACAGTGGTATTGAAGAAGATGAGCAACCCATGAAGGCTAGCTGCGATGACGAAGAAGAAGAAGAAGGCCAAGAGACTCTTAGCTCCTTAGTTTTGCCCGAAAGATGGGATGTCTTGGGTCTCGGTCAAGCCATGGTGGACTTCTCTGGCATGGTCGATGATAATTTTCTGAAGAATTTGGGGCTAGAGAAGGGAACGCGGAAAGTGGTAAATCATGAGGAAAGAGGTAGAGTTTTGCAGGCTATGGATGGTTGCAGCTATAAAGCTGCGGCAGGTGGATCTCTTTCTAATACCTTAGTTGCCCTTGCAAGGCTTGGAAGTCGCTCCCTCAAAGTTCCTGCTATAAGTGTGGCAATGACCGGTAGTGTAGGGAGTGATCTGTTGGGGGGTTTCTACAGCATTTCAGTATTGTGTCCATCATGGCCATTTGTGTCCCGAAAAAAGGGTGAACTGCAGTGTAATAGTGCCACACCTGTGTCTGAGTTCCTCTATCTCTATCCTTTCAATGTGGCTGCATTTCTTCTCCTTCCTATCTGTGAGTCTGTGACGCCCTCTGGCCCCCATCCCTCTTCTGTTTCATTTGCTAAGTGCAGCATTTGGCTAGCTGCCGAAGGGAGTTTGGGTTTCAGAGGAATTGGGACTTTTGGAGCCAGGTGCTCTCAATCACGATTCAGGATTGGTAACTATGTTTTTGTTCTTCCTCAAGTCAGAGGCGTTCCTTTGGCTGGATTTTGGGAAAAATTGCGCCGAGCAAATGTGCAATTTCTTTCCGAGCCTATCAAGGATGGGACTACTGGAACAGTTATAGTTCTCACAACTCCAGATGCCCAGCGAACAATGCTTGCATATCAGGGCACATCTTCAACTGTTAACTATGATGCATCCTTGGCCAGTGCAGTTTCCAAGACCAACATACTTATTGTTGAAGGGTATTTATTTGAACTTCCTGATACTATTAAAACAATAACCAAAGCATGTGAAAATGCTCGGAGGAATGGTGCCTTGGTTGCAATAACAGCTTCAGATGTTTCATGCATTGAGAGACACTTTGATGATTTTTGGGAAATTATTGGGAACAGTGTTGATTTAGTCTTTGCAAATGGTGATGAGGCCAGAGCTCTTTGTAATTTTGAAGCAAAGGAAAGTGCTGCTTCAGCTGCAAGGTATCTGAGCCACTTTGTTCCTCTGGTATCCGTTACAGATGGTCCTAGAGGCTCTTACATAGGTGTAAAAGGAGAAGCCGTATATATCCCTCCTTCTCCATGTGTTCCAGTGGATACTTGTGGTGCGGGTGATGCATATGCATCTGGTATTTTATATGGTCTTTTAAGAGGCATATCAGATTTGAGAGGTATAGGCACATTAGCAGCTAATGTTGCTTCTACTGTTGTTGGACAACAGGGAACACGCCTGAGAATTTCAGATGCAGTCAAGTTGGCTGAATCTTTCGAATTTCAACTCGATTCCTCTTCGGTTGGCACTGATCATATTTCCAGCGTCTAA 1698 0.4511 MSLSFLPVYSSHHLSSSLFFPTPHLSLLCLPKFSNAPTPQFILCCRRNASFSARCGPGVPDGAQYDSGIEEDEQPMKASCDDEEEEEGQETLSSLVLPERWDVLGLGQAMVDFSGMVDDNFLKNLGLEKGTRKVVNHEERGRVLQAMDGCSYKAAAGGSLSNTLVALARLGSRSLKVPAISVAMTGSVGSDLLGGFYSISVLCPSWPFVSRKKGELQCNSATPVSEFLYLYPFNVAAFLLLPICESVTPSGPHPSSVSFAKCSIWLAAEGSLGFRGIGTFGARCSQSRFRIGNYVFVLPQVRGVPLAGFWEKLRRANVQFLSEPIKDGTTGTVIVLTTPDAQRTMLAYQGTSSTVNYDASLASAVSKTNILIVEGYLFELPDTIKTITKACENARRNGALVAITASDVSCIERHFDDFWEIIGNSVDLVFANGDEARALCNFEAKESAASAARYLSHFVPLVSVTDGPRGSYIGVKGEAVYIPPSPCVPVDTCGAGDAYASGILYGLLRGISDLRGIGTLAANVASTVVGQQGTRLRISDAVKLAESFEFQLDSSSVGTDHISSV 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02677 565 Pfam pfkB family carbohydrate kinase 311 536 IPR011611 -
Vimu5g02677 565 Gene3D - 307 543 IPR029056 -
Vimu5g02677 565 CDD adenosine_kinase 100 537 - -
Vimu5g02677 565 FunFam Putative sugar kinase slr0537 256 540 - -
Vimu5g02677 565 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 491 504 IPR002173 GO:0016301
Vimu5g02677 565 Gene3D - 97 198 IPR029056 -
Vimu5g02677 565 SUPERFAMILY Ribokinase-like 310 537 IPR029056 -
Vimu5g02677 565 PANTHER SUGAR KINASE 98 198 - -
Vimu5g02677 565 SUPERFAMILY Ribokinase-like 101 197 IPR029056 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02677 Vimu-Chr5 36679080 36682942 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02677 - - gmx:100816996 475.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02677 5 36679080 36682942 Vimu5g02677 5 36679080 36682942 ECH