Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02668 ATGAGATCGGTGAAAGTAAGCAACATCTCGTCAGGTGCAACCGAGCAAGATTTGAGGGAATTTCTTACCTTTCCTGGAAAAATTGAACATGTTGAAATGGGAAGTGACAAGGGAAGTTCTAAAGTTGCGTATGTCACCTTCAGTACTCCAGAGGGAGCAGAAACTGCAGTTCTTCTCTCGGGAGCAGTTGTGTGTGGACAGTCTCTAAACATCGAATTAGCTAAGGATTATGCTCTGCCTTCCTCGACTAATTATGCTTTGCCTTCTTCAACCGCATCTCCAACTAGTAACGCTGAGAGTGGGGAATCTGGTTTGAGAAAGGCAGAGGATGTTGTAAGCACCATGTTAGCCAAGGGCTTCATTTTGGGTAAAGATGCATTGAATCGAGCAAAATCCTTTGATGAAAGGCACAGACTTACTTCCACGGCCTCAGCAAAAGTTGCTTCTTTGGACCAGAAGGTAGGATTTACTGAAAAGATCAGTGCTGGTACAGTTATAGTGAATGATAAGGTGAAAGAAATGGATGAGAAATTTCAAGTCTCAGAGAAGACTAAAACTGCAATTTCAGCAGCTGAGCAGTCTGTGTCCAGTGCTGGATCTGCCATAATGAAGAATCGGTATGTGTTGACTGGGGCTACATGGGTCACAGGTGCTTACAACAGGGTTGCAAAGAAGGCTGAGGAAGTGGGACAGAAAACTAAGGAGAAGGTTTTGGCGCAGAATAATCAAGGAAAAACTGAAGAAGGTCATGTCCAGACCAGTATGTCGGAACCCACGACAACTGATCAAACCTCCAAACAGGCAACCACGGTCAATGAACCCTCAAAACCTGAACCTCAACAGGCCACCACAGTTGATCCACCCTCCAAATCAGAAACTCAGCAGGCCACAACAGTTAATGAACCCTCCAAACCTGAACCTCAAGTGGCCACCACAGTTAACGAACCCTCCAAACCTGAACCTCAAATGGCCACCACAGTTAACGAACCCTCCAAACCTGAACCTCAACAGGTAACCAAGGATGGTCAATCTGCCAGTCCAGCAAAATCTAGTGCCTGA 1059 0.457 MRSVKVSNISSGATEQDLREFLTFPGKIEHVEMGSDKGSSKVAYVTFSTPEGAETAVLLSGAVVCGQSLNIELAKDYALPSSTNYALPSSTASPTSNAESGESGLRKAEDVVSTMLAKGFILGKDALNRAKSFDERHRLTSTASAKVASLDQKVGFTEKISAGTVIVNDKVKEMDEKFQVSEKTKTAISAAEQSVSSAGSAIMKNRYVLTGATWVTGAYNRVAKKAEEVGQKTKEKVLAQNNQGKTEEGHVQTSMSEPTTTDQTSKQATTVNEPSKPEPQQATTVDPPSKSETQQATTVNEPSKPEPQVATTVNEPSKPEPQMATTVNEPSKPEPQQVTKDGQSASPAKSSA 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02668 352 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5 68 IPR000504 GO:0003723
Vimu5g02668 352 MobiDBLite consensus disorder prediction 226 352 - -
Vimu5g02668 352 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 76 IPR000504 GO:0003723
Vimu5g02668 352 SUPERFAMILY RNA-binding domain, RBD 2 79 IPR035979 GO:0003676
Vimu5g02668 352 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 2 240 - -
Vimu5g02668 352 MobiDBLite consensus disorder prediction 86 102 - -
Vimu5g02668 352 MobiDBLite consensus disorder prediction 235 352 - -
Vimu5g02668 352 SMART rrm1_1 3 72 IPR000504 GO:0003723
Vimu5g02668 352 MobiDBLite consensus disorder prediction 86 105 - -
Vimu5g02668 352 Gene3D - 1 79 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02668 Vimu-Chr5 36631428 36633255 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02668 - - vum:124839032 630.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02668 5 36631428 36633255 Vimu5g02668 5 36631428 36633255 ECH