Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02665 ATGAGCGAAAATCTGATGGGAAGAGTGAACGCTTTGGGGGAGCGTCTGAAAATCGGAGGAGCTGAGGTGGGTCGGAAGATGAGTGCTGGAATGAGTTCTGTAAGCTTCAAAGTCAAAGAGTTCTTCCAGGATTCAAGCCATGCTGATAAACTCGTTGGGGAAGCTACATCTGAGACCCTTCATCACCCTCACTGGCCCATCATTCTTCATCTGTGTGACTTGATCAATGATGATCAGCTTAACACTGCTGAAGCGGTTCGTGCAATAAAGAAAAGGGTTCTTTCCAAGAGTCATAGAACTCAGTATCTGGCTCTGGTTCTGCTTGAAGCACTGGTCAAGAACTGTGACAAGGCTTTCTTGGAGGTGGCAACCGAGAGAGTCCTTGATGAGATGGTCAAGCTCATTGATGACCCTTATACTTTTGTTAATAACAGGAACAAGGCTTTGATGATGATTGAAGCATGGGGAGAGTCAACCACTGAACTTCGTTTTCTTCCTGTCTATGCACAAACTTTCAAGAGTTTGAAATCAAGGGGTATTCTATTCCCCGGTCGTGACAACGAAAGTTTGGCTCCTATTTTCACTCCACCTCGTTCTGGTGGCACTGCTCCAGCGGCAGATGTCAATCTTGAACATATTATGCAGCATAATGTACGAAGTTTTTCGCCTGTTACTCCTTCTGGTTCAGAGGCTGATGTCAGTCTTGCACATCTTACGCACCATGACGTTCATGTCAAAAGCTTTACGTCTCAGCAAACAGAGGAAGCTTTTGATGTTGCGAGAAACAGCTTTGAGCTTCTTTCTACCGTGTTATCTTCTTCAACGCAGAAGGATGTTCTAGAGGATGATTTGGTTACGACATTAGTACAACAGTGCCGACAGTCCCAGATCACTGTCCATACAATCATTGAGACGTCATGGGATAACGAAGCACTGCTTTGTGAGGCCTTGAATATAAATGATGAGATCGAGAAGGTTGTGAAGAAATATGAAGAAATGAAGAGGAAGAAGAAGCATGCAGTTGTTGCTTTTGAACCTGAAACTGCCATAGAAGCTTACGAGGCACCCCATTTTACAGAAGAGGAAGCTCTGGTTAGAAAGAGTGGAAGTTCGAGAAGTGAAGTTCAGAGAGGGAACCAGGATGCCATGTTGGATGATCTTGATGAGATGATATTTGGGAAAAAGGGTGGTTTCGATGGAGGACAACATCCAAACAAACAACGTTCATCAACAAAAGATGATCTCATCTCCTTCTGA 1257 0.4423 MSENLMGRVNALGERLKIGGAEVGRKMSAGMSSVSFKVKEFFQDSSHADKLVGEATSETLHHPHWPIILHLCDLINDDQLNTAEAVRAIKKRVLSKSHRTQYLALVLLEALVKNCDKAFLEVATERVLDEMVKLIDDPYTFVNNRNKALMMIEAWGESTTELRFLPVYAQTFKSLKSRGILFPGRDNESLAPIFTPPRSGGTAPAADVNLEHIMQHNVRSFSPVTPSGSEADVSLAHLTHHDVHVKSFTSQQTEEAFDVARNSFELLSTVLSSSTQKDVLEDDLVTTLVQQCRQSQITVHTIIETSWDNEALLCEALNINDEIEKVVKKYEEMKRKKKHAVVAFEPETAIEAYEAPHFTEEEALVRKSGSSRSEVQRGNQDAMLDDLDEMIFGKKGGFDGGQHPNKQRSSTKDDLISF 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02665 418 Gene3D - 39 199 IPR008942 -
Vimu5g02665 418 SMART VHS_2 48 179 IPR002014 GO:0035091|GO:0043130
Vimu5g02665 418 ProSiteProfiles GAT domain profile. 248 335 IPR004152 GO:0035091|GO:0043130
Vimu5g02665 418 Coils Coil 316 340 - -
Vimu5g02665 418 MobiDBLite consensus disorder prediction 393 418 - -
Vimu5g02665 418 Pfam VHS domain 46 178 IPR002014 GO:0035091|GO:0043130
Vimu5g02665 418 SUPERFAMILY GAT-like domain 182 335 - -
Vimu5g02665 418 ProSiteProfiles VHS domain profile. 55 183 IPR002014 GO:0035091|GO:0043130
Vimu5g02665 418 Gene3D - 237 337 IPR038425 -
Vimu5g02665 418 PANTHER TOM1-LIKE PROTEIN 1 1 418 IPR044836 GO:0035091|GO:0043130|GO:0043328
Vimu5g02665 418 Pfam GAT domain 261 335 IPR004152 GO:0035091|GO:0043130
Vimu5g02665 418 CDD VHS 48 177 - -
Vimu5g02665 418 SUPERFAMILY ENTH/VHS domain 44 183 IPR008942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02665 Vimu-Chr5 36623372 36624964 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02665 - - ccaj:109799203 568.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02665 5 36623372 36624964 Vimu5g02665 5 36623372 36624964 ECH