Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02654 ATGGTGAACACCAAACCAATGGCATCCGACCCTGAACAACCCTCTTTCGCAAAGGAAGGAAGTTCATTTGGTGAGGTTGGGAGTGCAAGGGAGCCTTTGCTTGTTGGGGTTCATGACTCCGAGAGATACTCTGTCTCTGCTGCAATTCTTCCTTTTATACAGAGGACTGTAATTTCTGTAAGTGGTGTAATGTTCACCATGTTTGCTGGATGGAAAAATCTGTTATTCGTGAAGGTTAAACTGAGGATGGCTGTTGTGCGCTGCATTGTGGTAGGGAAGTGGTCACTACAGTTTCTCTTCCCAGCATTTGGTGGCCTACTATTTGGCTATGATATTGGTGCCACATCTTCTGCAACCATTTCCATCGAGTCATCGACGCTAAGTGGAATATCTTGGTACAACTTGTCCTCCATTGAAATTGGTCTTCTTACTAGTGGATCGTTATATGGCGCCTTAATAGGCTCAGTGTTGGCCTTCAATGTTGCTGACTTCTTAGGAAGAAGAAGGGAGCTCATTTTAGCTGCATTACTATATTTTGTTGGAGCTCTTGTAACAGCATTCGCTCCTGATTTTCCTGTATTGGTGCTTGGGCGACTTATATATGGCATTGGAATTGGACTGGCAATGCATGCTGCTCCAATGTACATTGCAGAGACTGCTCCAACACCAATACGTGGACAACTAATATCTCTTAAAGAGTTTTTTATAGTACTTGGGATGGTGGCAGGATATGTAATTGGTAGCTTGTTTGTAGTTACTGTAGCTGGATGGAGGTATATGTATGGAGTTAGTAGTCCTATAGCCATCATCATGGGACTTGGAATGTGGTGGCTCCCAGCTTCTCCTAGATGGTTACTTTTGCGTGCTGTACAGGGAAAAGGAGATGTTCAGAATTCGAAAGACATAGCAATTCGTAGTTTGTGCCAGCTTCGAGGTCAGGCTAGTGGTGATTCAGCTCATGGGCAAGTTGATGAGATTCTTGCAGAACTTTCTTATATAGGAAAAGAAAAGGAAGCTACCTTCGGAGAATTATTCCAAGGAAAATGCTTGAAAGCCCTTTGGATTGGTGCAGGACTGGTCTTGTTTCAGCAGATCACAGGGCAGCCAAGTGTGCTCTACTATGCTGCATCAATCTTTCAGAGTGCAGGGTTTTCCGGAGCATCTGATGCAACCCGAGTCTCTATTCTCCTTGGGGCTTTTAAGTTGATTATGACCGGAGTGGCAGTTCTCATTGTTGATAAACTCGGAAGGAGGCCTTTACTTCTAGGAGGAGTTTCAGGAATAGTGATCTCTTTATTCCTTATGGGTTCATACTACGTTTTCTTGGATAACTCACCAGTTATTGCTGTAGTTGGTCTGCTGTTGTACGTAGGCTGTTACCAGATTTCCTTTGGTCCAATTGGTTGGCTCATGATAGCAGAGATTTTCCCCTTACGCCTAAGAGGTCGAGGACTTGGTATAGCAGTACTCGTCAATTTTGGTGCAAATGCCCTAGTCACTTTTGCTTTTTCACCACTTGAGGAACTACTGGGAGCAGGAATCTTGTTCTACATCTTTTGTGTGATAGCCGTGGCATCTCTTGCATTCATATACCTTGTTGTACCAGAAACAAAGGGGCTTACTCTGGAGGAGATAGAAGCCAAATGCCTCTAA 1653 0.4404 MVNTKPMASDPEQPSFAKEGSSFGEVGSAREPLLVGVHDSERYSVSAAILPFIQRTVISVSGVMFTMFAGWKNLLFVKVKLRMAVVRCIVVGKWSLQFLFPAFGGLLFGYDIGATSSATISIESSTLSGISWYNLSSIEIGLLTSGSLYGALIGSVLAFNVADFLGRRRELILAALLYFVGALVTAFAPDFPVLVLGRLIYGIGIGLAMHAAPMYIAETAPTPIRGQLISLKEFFIVLGMVAGYVIGSLFVVTVAGWRYMYGVSSPIAIIMGLGMWWLPASPRWLLLRAVQGKGDVQNSKDIAIRSLCQLRGQASGDSAHGQVDEILAELSYIGKEKEATFGELFQGKCLKALWIGAGLVLFQQITGQPSVLYYAASIFQSAGFSGASDATRVSILLGAFKLIMTGVAVLIVDKLGRRPLLLGGVSGIVISLFLMGSYYVFLDNSPVIAVVGLLLYVGCYQISFGPIGWLMIAEIFPLRLRGRGLGIAVLVNFGANALVTFAFSPLEELLGAGILFYIFCVIAVASLAFIYLVVPETKGLTLEEIEAKCL 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02654 550 FunFam D-xylose-proton symporter-like 3, chloroplastic 91 549 - -
Vimu5g02654 550 Gene3D MFS general substrate transporter like domains 91 548 IPR036259 -
Vimu5g02654 550 PRINTS Sugar transporter signature 195 214 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu5g02654 550 PRINTS Sugar transporter signature 105 115 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu5g02654 550 PRINTS Sugar transporter signature 473 485 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu5g02654 550 PRINTS Sugar transporter signature 450 471 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu5g02654 550 PRINTS Sugar transporter signature 363 373 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu5g02654 550 Pfam Sugar (and other) transporter 100 547 IPR005828 GO:0016020|GO:0022857|GO:0055085
Vimu5g02654 550 ProSitePatterns Sugar transport proteins signature 1. 408 424 IPR005829 GO:0016020|GO:0022857|GO:0055085
Vimu5g02654 550 ProSitePatterns Sugar transport proteins signature 2. 200 225 IPR005829 GO:0016020|GO:0022857|GO:0055085
Vimu5g02654 550 MobiDBLite consensus disorder prediction 1 24 - -
Vimu5g02654 550 CDD MFS_GLUT10_12_Class3_like 100 545 - -
Vimu5g02654 550 ProSitePatterns Sugar transport proteins signature 1. 158 175 IPR005829 GO:0016020|GO:0022857|GO:0055085
Vimu5g02654 550 ProSiteProfiles Major facilitator superfamily (MFS) profile. 97 538 IPR020846 GO:0022857
Vimu5g02654 550 NCBIfam sugar porter family MFS transporter 99 545 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu5g02654 550 SUPERFAMILY MFS general substrate transporter 96 546 IPR036259 -
Vimu5g02654 550 PANTHER D-XYLOSE-PROTON SYMPORTER-LIKE 2 86 549 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02654 Vimu-Chr5 36568753 36576887 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02654 7 550 Organic Solute Cotransporters AT5G17010 67.942 0.0 724
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02654 - - gmx:100801856 836.254