Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02653 ATGCAAGGCTCAGCAAAATTAGAAGAAGAGGCAAAGCGTGCTCTACCATTAACTATACCTAGTCACCAGTCAGACATATTATTCAGGTTCGTTAGAGAGCCGCCGGCGCTACACATCGTTGCCCTCGTTTTCATCGTGTTCTCCGACACTCTCGCCGCCGCCGGAGCTTATTCTCTCTCCGCCGAACGCAACGAATTCCGTTCAGATGGCTCAGAATGGGAAACCGCCGAAGCTTCCCGTGGAAGGGAAGCGCAACGTCCTAATCACCAGTGCCTTGCCTTACTAGGCGTTCTGAGCGCCGATGTGTTCGCTCGCTACTGTCGGATTCGGGGTTACAACACTATTTACATCTGCGGTACTGATGAGTATGGAACCGCGACAGAGACTAAAGCCATGGAAGAAAAGTGCTCTCCTAAGGAGATCTGTGACAAATACTACGCTATACATAAGGAGGTGTACAATTGGTTCAACATAAGTTTTGACGAATTTGGGAGGACATCATGCCCTCAACAAACTGAAGTTTGTCAAGAAATTTTTAAAAAAATATTTGAGAACAAATGGCTCTCCGAAAACACAATGCAGCAGCTTTATTGTGACACGTGTGAAAGGTTCTTAGCTGATAGGCTTGTGGAGGGAACCTGCCCGACTCCGGGGTGTGAGTATGATTCTGCTCGAGGAGACCAATGTGAGAAGTGTGGAAAACTTCTGAATCCAACAGAATTGAAAAATCCCAGATGCAAGGTTTGTCAGAAAACTCCTCGAATTCGGGATACAGACCATTTGTTTCTTGAACTTCCTTTATTGAAGGACAGATTGGAAAAATATATCACTGAGATGTCTGTGGCTGGTGGATGGAGTCAGAATGCCATCCAAACAACAAATTCATGGCTTAGAGAAGGACTAAAGCCACGCTGTATCACGAGGGATCTAAAGTGGGGGGTTCCCGTTCCACATGAAAAATACAAAGACAAGGTTTTCTATGTGTGGTTTGATGCACCGATTGGGTATGTGTCAATCACTTCATGCTACACGCGTGATTGGGAGAAATGGTGGAAAAACCCAGAGAACGTGGAGCTGTATCAGTTTATGGGCAAGGACAATGTGCCATTCCACACTGTGATGTTTCCATCTACTCTACTTGGAACTGGCGAGAATTGGACTTTAATGAAGACTATCAGTGTTACCGAATACTTAAATTATGAATCAGGTAAGTTTTCCAAGAGCAAAGGTATCGGGGTATTTGGTAATGATGTGAAAGATACAGAGATTCCAGTTGAAGTATGGAGATATTACTTGCTCACAAATAGGCCTGAGGTATCGGATACATTATTTACATGGCCTGATTTGCAAGCTAAATTAAATAGTGAATTACTGAATAATTTGGGCAACTTTATCAACCGAGTTTTGAGTTTTATTGCCAAACCTGAAGGTCAAGGATACGATTCCATTATCCCCTCCATTCCTGATGATGTAAGTGGCGACTCCCATAATTTGACCAAAAAATTAGCTGATAAAGTTGCTGCATATATAGACCAATACATAGAAGCAATGGAGAAGGTTAAACTAAAGCAAGGACTGAAAACTGCAATGAGCATATCTAGCGAGGGAAATGCATATCTCCAGGAAGCTCAATTCTGGCGTCTTTACAAGGAAAACAAATCACTCTGCGCTCTTGTTATGAAAACTGCAGTTGGGATTGTATACCTTCTGGCATGTTTATTGGAACCTTTTATCCCATCTTTCACACTCGAAGTATTTAATCAACTAAATTTGCCCGCGGAGATACATGTCTCACTTTGTGATGATAAAGGAGATGTTGATAGGGTAAAAAGGCCTTGGGATATTGTAAGTTCTGGTCATAAAATTGGAACACCCAAGCCATTGTTCAAGGAGCTGAAAGATGAAGAAGTGGACTTCTACAGGAAGAAGTTCGCTGGAAGTCAGGCCGATAGGATTGTGCGAGCTGAGGCGGAAGCTGAAAATGTTGCCGAGAAACTGAGGAAAACAAAAGTTTCAGATGGCAATGGAAAGAAAAAACCAGCAAAATCATCTAACGAAGCTAAAAACAAAGCAGTGCCTGAACCAGATATTACCATCACAAGGCTTGATATACGGGTTGGCCTTATAACAAAAGCTCAAAAACATCCTGATGCAGATGCACTGTATGTTGAAGAGATTGACGTTGGGGAAGAACAGACCAGAACTGTTGTTAGTGGGCTCGTCAAATACATACCACTTGATGAAATGCAGAATCGAAAGGTCTGTGTTCTTTGTAACCTAAAGCCTGCATCCATGAGAGGCATTAAATCCCAAGCCATGGTTCTTGCTGCTTCAAATGATGATCATTCCAAGGTTGAGTTGGTTGAGCCTCCCAGTTCTGCTAAAGTTGGAGAAAGAATTACATTCCCAGGAAGTGAAGGTAATCCTGATGAACTCTTAAATCCAAAGAAGAAAGTTTGGGAAACATTGCAAGTGGATCTTCACAGTAATGAGGATCTGGTAGCATGCTACAAAAATGTTCCACTCACCACCTCAGCAGGCGTTTGCAAGGTTTCATCCATACGCGGTGGATCTATAAAGTAG 2583 0.4282 MQGSAKLEEEAKRALPLTIPSHQSDILFRFVREPPALHIVALVFIVFSDTLAAAGAYSLSAERNEFRSDGSEWETAEASRGREAQRPNHQCLALLGVLSADVFARYCRIRGYNTIYICGTDEYGTATETKAMEEKCSPKEICDKYYAIHKEVYNWFNISFDEFGRTSCPQQTEVCQEIFKKIFENKWLSENTMQQLYCDTCERFLADRLVEGTCPTPGCEYDSARGDQCEKCGKLLNPTELKNPRCKVCQKTPRIRDTDHLFLELPLLKDRLEKYITEMSVAGGWSQNAIQTTNSWLREGLKPRCITRDLKWGVPVPHEKYKDKVFYVWFDAPIGYVSITSCYTRDWEKWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDVKDTEIPVEVWRYYLLTNRPEVSDTLFTWPDLQAKLNSELLNNLGNFINRVLSFIAKPEGQGYDSIIPSIPDDVSGDSHNLTKKLADKVAAYIDQYIEAMEKVKLKQGLKTAMSISSEGNAYLQEAQFWRLYKENKSLCALVMKTAVGIVYLLACLLEPFIPSFTLEVFNQLNLPAEIHVSLCDDKGDVDRVKRPWDIVSSGHKIGTPKPLFKELKDEEVDFYRKKFAGSQADRIVRAEAEAENVAEKLRKTKVSDGNGKKKPAKSSNEAKNKAVPEPDITITRLDIRVGLITKAQKHPDADALYVEEIDVGEEQTRTVVSGLVKYIPLDEMQNRKVCVLCNLKPASMRGIKSQAMVLAASNDDHSKVELVEPPSSAKVGERITFPGSEGNPDELLNPKKKVWETLQVDLHSNEDLVACYKNVPLTTSAGVCKVSSIRGGSIK 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02653 860 Coils Coil 652 672 - -
Vimu5g02653 860 NCBIfam methionine--tRNA ligase 95 595 IPR014758 GO:0000166|GO:0004825|GO:0005524|GO:0006431
Vimu5g02653 860 SUPERFAMILY Methionyl-tRNA synthetase (MetRS), Zn-domain 210 246 IPR029038 -
Vimu5g02653 860 PRINTS Methionyl-tRNA synthetase signature 158 169 IPR033911 GO:0004825|GO:0006431
Vimu5g02653 860 PRINTS Methionyl-tRNA synthetase signature 361 376 IPR033911 GO:0004825|GO:0006431
Vimu5g02653 860 PRINTS Methionyl-tRNA synthetase signature 110 124 IPR033911 GO:0004825|GO:0006431
Vimu5g02653 860 PRINTS Methionyl-tRNA synthetase signature 326 337 IPR033911 GO:0004825|GO:0006431
Vimu5g02653 860 PRINTS Methionyl-tRNA synthetase signature 456 467 IPR033911 GO:0004825|GO:0006431
Vimu5g02653 860 ProSiteProfiles tRNA-binding domain profile. 698 801 IPR002547 GO:0000049
Vimu5g02653 860 FunFam tyrosine--tRNA ligase, cytoplasmic isoform X2 697 860 - -
Vimu5g02653 860 Gene3D - 458 631 - -
Vimu5g02653 860 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 461 645 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vimu5g02653 860 FunFam Methionine--tRNA ligase cytoplasmic 458 631 - -
Vimu5g02653 860 Pfam Anticodon binding domain of methionyl tRNA ligase 495 648 IPR041872 -
Vimu5g02653 860 PANTHER METHIONINE--TRNA LIGASE 97 856 IPR023458 GO:0004825
Vimu5g02653 860 MobiDBLite consensus disorder prediction 665 685 - -
Vimu5g02653 860 CDD MetRS_core 94 444 IPR033911 GO:0004825|GO:0006431
Vimu5g02653 860 CDD Anticodon_Ia_Met 453 589 IPR041872 -
Vimu5g02653 860 Gene3D - 697 860 IPR012340 -
Vimu5g02653 860 CDD tRNA_bind_EMAP-II_like 697 801 - -
Vimu5g02653 860 Pfam tRNA synthetases class I (M) 95 469 IPR015413 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vimu5g02653 860 Gene3D - 210 246 IPR029038 -
Vimu5g02653 860 SUPERFAMILY Nucleotidylyl transferase 95 456 - -
Vimu5g02653 860 SUPERFAMILY Nucleic acid-binding proteins 700 844 IPR012340 -
Vimu5g02653 860 MobiDBLite consensus disorder prediction 665 694 - -
Vimu5g02653 860 Pfam Putative tRNA binding domain 704 799 IPR002547 GO:0000049
Vimu5g02653 860 Gene3D HUPs 94 457 IPR014729 -
Vimu5g02653 860 FunFam Methionine--tRNA ligase 210 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02653 Vimu-Chr5 36536588 36544553 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02653 K01874 - gmx:100809861 1463.74