Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02651 ATGGCCGCCGAGAAGCTCCGGGATTTGAGTCAGCCGATTGACGTTCCCCTCCTTGATGCCACCGTCGCTGCCTTCTATGGCACCGGATCTAAAGAAGAGAGAAATGCCGCTGATCAGATTCTGCGTGACTTGCAAAACAATCCTGATATGTGGCTACAAGTCATGCATATTTTGCAAAATACTCAGAATCTGAATACTAAGTTCTTTGCCTTACAGGTTCTAGAAGGTGTAATTAAGTATAGATGGAATGCATTACCTGTTGAACAGCGAGATGGAATGAAAAATTTCATCTCTGATGTCATTGTACAGCTTTCTGGCAATGATGCTTCATTTCGATCAGAAAGGCTGTATGTCAACAAACTCAACATTATATTAGTTCAGATTTTGAAGCATGAATGGCCAGCAAGATGGCGAAGTTTTATTCCCGACCTTGTCTCTGCAGCTAAAACTAGTGAAACAATTTGTGAAAATTGTATGGTTATATTGAAACTTTTGAGTGAAGAGGTTTTTGATTTTTCACGAGGCGAGATGACCCAGCAGAAGATAAAAGAGCTTAAACAATCTTTGAACAGTGAATTTCAACTCATTCATGAGTTATGCTTGTATGTGTTATCAGCCTCCCAAAGGACTGAACTTATTCGAGCGACTCTCTCTACATTGCATGCCTTTTTATCATGGATTCCCTTGGGTTATATATTTGAATCACCATTGCTTGAGACACTCCTCAAATTTTTCCCACTCCCAGCATATAGGAACCTAACACTGCAGTGTTTAACTGAGGTGGCAGCCCTTCAATTTGGAAATTATTATGATGTGCAGTATGTCAAGATGTATAACATATTCATGGTCCAGTTGCAGAGTATACTCCCACCAACTTCAGATATTCCTGACGCGTATACAAAGGGCTCAACTGAGGAACAAGCATTTATACAGAATCTGGCACTTTTCTTCACATCCTTTTACAAGGTTCATATTCGCATCCTGGAATCCACTCAAGAGAATATAGCTGCTTTGCTTGTAGGCCTTGAATATCTTATCAACATTTCTTATGTTGATGATACTGAGGTTTTTAAGGTCTGTTTAGACTACTGGAATTCCTTGGTATCGGAGCTGTTTGAACCACACCGAAGTTTGGACAATCCTGCTGCTGCAGCAACCCTGATGGGACTTCAGGTACCAGCAATGCTCCCTGGTATGGTTGATGGACACGGTTCTCAGCTTCTTCAGCGCCGACAACTGTATGCTGGTCCCATGTCAAAGCTGAGGATGCTCATGATCTGCCGAATGGCAAAACCTGAAGAAGTTCTCATAGTTGAAGATGAAAACGGGAACATTGTTCGTGAAACCTTGAAAGACAATGATGTTCTTGTTCAGTACAAGATTATGAGGGAGACCCTTATTTATTTATCACATCTTGACCATGATGATACTGAAAAGCAGATGCTGAGGAAATTGAGTAAACAGCTTAGTGGCGAGGATTGGACATGGAACAATTTAAATACACTATGCTGGGCAATAGGTTCTATATCCGGTTCTATGATGGAAGAACAGGAAAACAGATTTTTGGTTATGGTCATTCGTGACTTATTAAACCTTTGTGAAATTACAAAGGGAAAAGATAACAAAGCTGTTATTGCAAGTAATATCATGTATGTTGTGGGCCAGTATCCAAGATTTTTAAGAGCTCATTGGAAATTCCTTAAAACTGTTGTGAATAAGTTGTTTGAGTTTATGCATGAGACCCATCCTGGAGTTCAGGATATGGCTTGTGACACATTTCTGAAAATAGTGCAGAAGTGCAAGCGGAAATTTGTGATCACTCAGGTTGGTGAAAATGAACCGTTTGTGTCTGAGCTTCTGACAGGCCTTCCCACCACCATTATGGATCTTGAACCTCATCAAATACATTCCTTCTATGAATCTGTTGGTCACATGATTCAGGCAGAGTCTGATGCGCAGAAGCGAGATGAATATCTTCAGCGATTGATGGAGCTCCCAAATCAGAAATGGCTGGAAATTATAGGACAGGCTCATCAAAATGTTGAATTTTTAAAGGATCAGGATGTTATCCGGACAGTGCTTAATATATTGCAGGCAAGTTCAAGTTTTTTATATTCAGGGACTCTCTACGAGCTTATTTCAAAGAGTATTACTGAAGGGGGACCTTATACTTCTAGAACATCCTACGTGAAACTTTTACGTTCGGTCAAGAGGGAAACACTTAAGCTGATTGAGACATTCTTGGATAAGGCGGAAGACCAACCACAAATTGGCAAACAATTCGTGCCTCCAATGATGGATCCTGTTCTTGGAGATTATGCGAGGAATGTTCCTGATGCTAGGGAGTCAGAGGTTTTGTCACTGTTTGCCACAATTGTGAATAAATATAAATCTGCAATGATTGAAGATGTACCACGGATATTTGAAGCTGTCTTTCAGTGCACACTTGAGATGATTACAAAAAATTTTGAAGATTACCCAGAGCATCGGCTCAAGTTCTTCTCTCTTCTTCGTGCCATAGCTACTCATTGTTTTCCTGCATTAATCTGCCTGTCAAGTCAGCAATTGAAGCTTGTTATGGACTCTATCATATGGGCTTTTCGGCACACTGAAAGAAATATTGCTGAAACTGGGCTGAACCTGCTGTTAGAGATGCTAAAGAAATTTCAGGGCTCAGAGTTCTGTAATCAGTTTTATCGGTCATACTTTTTGACAATTGAACAAGAGATATTCGCCGTGTTGACTGATACTTTTCATAAGCCTGGGTTCAAATTGCATGTCTTGGTGCTTCAGCATTTGTTCTGTTTGGTGGAAACTGGTGTCGTAACTGAAGCTCTTTGGGATGTTGCTACTGGTCCATATCATTACCCAAGTAATTCTGCGTTTGTACGAGAGTTTACCATAAAGCTTCTAAGCACCTCATTTCCTAACATGACCGCAGCAGAGGTTACTCAATTTGTTAATGGACTCTTCGAGTCAACCAATGATCTATCTACTTTTAAAAATCATATACGAGATTTTCTTATCCAGTCCAAAGAATTTTCAGCTCAGGATAACAAAGATTTATATGCTGAAGAGGCTGCGGCTCAGAGAGAGAGAGAACGACAAAGAATGCTTTCTATTCCTGGGCTTATTGCTCCTAGCGAATTGCAAGATGAAATGGTGGACTCGTAG 3174 0.4045 MAAEKLRDLSQPIDVPLLDATVAAFYGTGSKEERNAADQILRDLQNNPDMWLQVMHILQNTQNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNFISDVIVQLSGNDASFRSERLYVNKLNIILVQILKHEWPARWRSFIPDLVSAAKTSETICENCMVILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTELIRATLSTLHAFLSWIPLGYIFESPLLETLLKFFPLPAYRNLTLQCLTEVAALQFGNYYDVQYVKMYNIFMVQLQSILPPTSDIPDAYTKGSTEEQAFIQNLALFFTSFYKVHIRILESTQENIAALLVGLEYLINISYVDDTEVFKVCLDYWNSLVSELFEPHRSLDNPAAAATLMGLQVPAMLPGMVDGHGSQLLQRRQLYAGPMSKLRMLMICRMAKPEEVLIVEDENGNIVRETLKDNDVLVQYKIMRETLIYLSHLDHDDTEKQMLRKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEITKGKDNKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVITQVGENEPFVSELLTGLPTTIMDLEPHQIHSFYESVGHMIQAESDAQKRDEYLQRLMELPNQKWLEIIGQAHQNVEFLKDQDVIRTVLNILQASSSFLYSGTLYELISKSITEGGPYTSRTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGKQFVPPMMDPVLGDYARNVPDARESEVLSLFATIVNKYKSAMIEDVPRIFEAVFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALICLSSQQLKLVMDSIIWAFRHTERNIAETGLNLLLEMLKKFQGSEFCNQFYRSYFLTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLVETGVVTEALWDVATGPYHYPSNSAFVREFTIKLLSTSFPNMTAAEVTQFVNGLFESTNDLSTFKNHIRDFLIQSKEFSAQDNKDLYAEEAAAQRERERQRMLSIPGLIAPSELQDEMVDS 1057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02651 1057 Pfam Exportin 1-like protein 115 258 IPR013598 -
Vimu5g02651 1057 Pfam CRM1 / Exportin repeat 2 410 477 IPR041235 -
Vimu5g02651 1057 Pfam Importin-beta N-terminal domain 37 103 IPR001494 GO:0006886|GO:0031267
Vimu5g02651 1057 Gene3D - 1 1040 IPR011989 -
Vimu5g02651 1057 SUPERFAMILY ARM repeat 22 1006 IPR016024 -
Vimu5g02651 1057 Pfam Chromosome region maintenance or exportin repeat 337 372 IPR041123 -
Vimu5g02651 1057 Pfam CRM1 C terminal 711 1015 IPR014877 GO:0005049
Vimu5g02651 1057 ProSiteProfiles Importin-beta N-terminal domain profile. 37 103 IPR001494 GO:0006886|GO:0031267
Vimu5g02651 1057 FunFam protein EXPORTIN 1A 1 1041 - -
Vimu5g02651 1057 Pfam CRM1 / Exportin repeat 3 491 540 IPR040485 -
Vimu5g02651 1057 SMART IBN_N_2 37 103 IPR001494 GO:0006886|GO:0031267
Vimu5g02651 1057 PANTHER EXPORTIN 1/5 4 1055 IPR045065 GO:0005049|GO:0006611
Vimu5g02651 1057 SMART CRM1_C_2 687 1016 IPR014877 GO:0005049
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02651 Vimu-Chr5 36521535 36533856 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02651 K14290 - gmx:100813443 1994.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02651 5 36521535 36533856 Vimu5g02651 5 36521535 36533856 ECH