Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02650 ATGGGTCAAACTTTTCGGAAGCTCTTCGATACATTCTTCGCAAATACTGAGATGCGGGTTGTCATGCTTGGTCTTGATGCTGCCGGCAAAACTACTATACTGTACAAGCTCCACATCGGAGAAGTTTTATCTACTGTTCCTACAATTGGTTTTAATGTGGAGAAGGTTCAGTATAAGAATGTTGTTTTCACAGTTTGGGATGTTGGAGGGCAAGAGAAATTAAGGACACTTTGGAGGCACTATTTCAACAACACTGATGGTTTGATATATGTTGTTGATAGTTTGGACCGTGAAAGGCTAGGGAAAGCTAAGCAGGAATTTCAGGCAGTCATAAATGATCCGTTTATGCTCCACAGTGTAATATTGGTGCTTGCTAACAAACAGGACCTGAGAGGAGCAATGTCACCAAGGGAAGTATGTGAAGGATTAGGTCTCTTTGATCTCAAGAATAGAAAGTGGCACATACAGGGCACTTGTGCTCTTCGGGGAGATGGCCTTTATGAGGGCTTGGATTGGCTGTCCACAACTCTGAAGGAGAGAAAAGCTGCCGGATATTCTTCAATAGGACTAGGAACTTCATCCATCTAA 588 0.4286 MGQTFRKLFDTFFANTEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVVFTVWDVGGQEKLRTLWRHYFNNTDGLIYVVDSLDRERLGKAKQEFQAVINDPFMLHSVILVLANKQDLRGAMSPREVCEGLGLFDLKNRKWHIQGTCALRGDGLYEGLDWLSTTLKERKAAGYSSIGLGTSSI 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02650 195 PRINTS GTP-binding SAR1 protein signature 119 140 IPR006689 GO:0003924|GO:0005525
Vimu5g02650 195 PRINTS GTP-binding SAR1 protein signature 47 71 IPR006689 GO:0003924|GO:0005525
Vimu5g02650 195 PRINTS GTP-binding SAR1 protein signature 19 42 IPR006689 GO:0003924|GO:0005525
Vimu5g02650 195 PRINTS GTP-binding SAR1 protein signature 74 99 IPR006689 GO:0003924|GO:0005525
Vimu5g02650 195 NCBIfam small GTP-binding protein domain 16 138 IPR005225 GO:0005525
Vimu5g02650 195 CDD Arf1_5_like 18 176 IPR045872 GO:0003924
Vimu5g02650 195 Pfam ADP-ribosylation factor family 7 176 IPR006689 GO:0003924|GO:0005525
Vimu5g02650 195 SMART arf_sub_2 1 181 - -
Vimu5g02650 195 Gene3D - 3 187 IPR027417 -
Vimu5g02650 195 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 181 IPR027417 -
Vimu5g02650 195 SMART sar_sub_1 3 177 IPR006689 GO:0003924|GO:0005525
Vimu5g02650 195 ProSiteProfiles small GTPase Arf family profile. 11 177 - -
Vimu5g02650 195 PANTHER ADP RIBOSYLATION FACTOR-RELATED 1 174 IPR024156 GO:0005525
Vimu5g02650 195 SMART rab_sub_5 18 180 - -
Vimu5g02650 195 FunFam ADP-ribosylation factor 2 4 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02650 Vimu-Chr5 36516103 36518751 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02650 K07937 - gmx:100816276 382.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02650 5 36516103 36518751 Vimu5g02650 5 36516103 36518751 ECH