Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02641 ATGACGACGTCGTTCGGTGCAGCTACCACCTCGGCGGCGCTCAAGGACGCCAAGCTTCAGATCCCAAACTTCCATGGCTTGAGGCCTGCCACCGCCTCTTCTCTCACGCGCAATGCTCTCCCGCTTCCTTCATCCACACGTTCTCTCGTCATCACACGTGCCGTTTCCACGCCCGTGCAGCCTGAAACTACCACTGTAAAGCGCAGCAAAGTTGAAATATTCAAAGAACAAAGCAATTTCATAAGATATCCTCTGAATGAGGACATGTTGACGGATGCCCCTAATATAAGTGAGGCTGCCACTCAGTTGATCAAGTTTCATGGAAGCTATCAGCAGTACAATAGAGAAGAGCGTGGTTCCCGAAGCTACTCTTTCATGATACGTACTAAGAACCCTTGTGGGAAGGTTTCAAACCAACTCTACTTGACCATGGACGATCTGGCTGACCAGTTTGGGATTGGGACGCTTCGGCTCACCACCAGACAAACTTTTCAGCTCCATGGTGTTCTTAAGAAGGATCTTAAAACAGTGATGGGTACCATTATTAGAAGTATGGGCTCGACTCTTGGTGCGTGTGGTGACCTAAACAGGAATGTGCTTGCTCCTGCTGCGCCCCTCGTGAGAAAGGATTATCTTTTGGCTCAGCAGACTGCGGAAAACATTGCTGCGCTCCTGTCTCCTCAATCTGGTTTCTACTATGATATTTGGGTAGACGGAGAAAAGATTTTGTCATCAGAACCGCCTGAAGTAGTTCAGGCACGGAATGACAATTCTCATGGGACAAATTTCCCAGATTCACCGGAGCCCATCTACGGTACTCAGTTCTTGCCGAGGAAATTCAAAATTGCTGTTACAGTACCAACTGATAACTCGGTGGACGTTCTCACAAATGACATTGGTGTTGTTGTTGTCACCGATGAAGCCGGGGAGCCTCAAGGGTACAACATATATGTAGGTGGAGGAATGGGAAGAACTCATAGGGTAGAAACCACTTTTCCTCGCTTGGCCGAACCGTTAGGTTATGTACCAAAGGAGGATATTTTGTACGCAGTGAAGGCAATTGTTGTCACACAACGAGAAAATGGGAGACGAGATGACCGCAGGTATAGTAGAATGAAATATCTGATCAGCTCTTGGGGAATTGAAAAGTTTAGAAGCGTGGTTGAGCAGTATTATGGCAAGAAATTTGAACCTTTCCGTGTATTGCCAGAATGGGAATTTAAAAGTTATCTTGGCTGGCATGAACAGGGTGATGGCAAATTATTTTATGGGCTTCATGTTGATAATGGTAGAATTGGTGGAAAGATGAAAAAGACATTGAGGGAGGTTATTGAGAAGTATAATTTGAATGTGAGAATCACTCCAAATCAGAACATCATCTTGACCGATGTTCGTTCTTCATGGAAGCGTCCAATTACAACAACTCTTGCTCAGGCTGGTCTGCTGCAACCTAGATTTGTAGATCCCCTCAACATAACAGCAATGGCATGCCCTGCTTTCCCATTATGTCCACTGGCAATTACTGAAGCTGAACGTGGGATACCTGACATTCTTAAGCGTATTCGGGCTGTTTTTGATAAGGTTGGTCTGAGGTATAGTGAGTCTGTAGTTGTAAGGATAACTGGCTGCCCTAATGGCTGCGCTAGACCATACATGGCTGAACTTGGGCTAGTTGGTGATGGCCCAAACAGTTACCAGATTTGGCTTGGAGGGAACAAGAAACAAACATCATTAGCTCGAAGTTTCATGGACAAGGTGAAGCTTCACGACCTTGAAAAAGTTTTGGAACCTTTATTTTATTATTGGAAGCAAAGGCGTCAATCTAAAGAATCATTTGGTGACTTCACAAACAGAATGGGATTTGATAAGCTTAAGGAACATATTGAGAAATGGGAAGGTCCGGTGGTTGCACCATCACGCCACAATCTCAAGCTTTTTGCTGACAAGGAGACGTACGATGCAATGGATGAATTGGCAAAGCTTCAAAACAAAAGTGCTCATCAGTTGGCCATGGAAATTATCCGTAATTATGTTGCTTCTAACCAAAATGGAAAAGGTGAATGA 2064 0.4491 MTTSFGAATTSAALKDAKLQIPNFHGLRPATASSLTRNALPLPSSTRSLVITRAVSTPVQPETTTVKRSKVEIFKEQSNFIRYPLNEDMLTDAPNISEAATQLIKFHGSYQQYNREERGSRSYSFMIRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMGTIIRSMGSTLGACGDLNRNVLAPAAPLVRKDYLLAQQTAENIAALLSPQSGFYYDIWVDGEKILSSEPPEVVQARNDNSHGTNFPDSPEPIYGTQFLPRKFKIAVTVPTDNSVDVLTNDIGVVVVTDEAGEPQGYNIYVGGGMGRTHRVETTFPRLAEPLGYVPKEDILYAVKAIVVTQRENGRRDDRRYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRVLPEWEFKSYLGWHEQGDGKLFYGLHVDNGRIGGKMKKTLREVIEKYNLNVRITPNQNIILTDVRSSWKRPITTTLAQAGLLQPRFVDPLNITAMACPAFPLCPLAITEAERGIPDILKRIRAVFDKVGLRYSESVVVRITGCPNGCARPYMAELGLVGDGPNSYQIWLGGNKKQTSLARSFMDKVKLHDLEKVLEPLFYYWKQRRQSKESFGDFTNRMGFDKLKEHIEKWEGPVVAPSRHNLKLFADKETYDAMDELAKLQNKSAHQLAMEIIRNYVASNQNGKGE 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02641 687 PANTHER SULFITE REDUCTASE [NADPH] SUBUNIT BETA-RELATED 28 635 IPR045169 GO:0016491|GO:0020037|GO:0051536
Vimu5g02641 687 Pfam Nitrite and sulphite reductase 4Fe-4S domain 218 396 IPR006067 GO:0016491|GO:0020037|GO:0051536
Vimu5g02641 687 SUPERFAMILY Nitrite/Sulfite reductase N-terminal domain-like 64 192 IPR036136 GO:0016491
Vimu5g02641 687 FunFam Sulfite reductase [ferredoxin], chloroplastic 401 484 - -
Vimu5g02641 687 Gene3D Sulfite Reductase Hemoprotein, domain 1 192 400 IPR045854 -
Vimu5g02641 687 Pfam Nitrite/Sulfite reductase ferredoxin-like half domain 124 178 IPR005117 GO:0016491
Vimu5g02641 687 Pfam Nitrite/Sulfite reductase ferredoxin-like half domain 414 467 IPR005117 GO:0016491
Vimu5g02641 687 SUPERFAMILY Nitrite and sulphite reductase 4Fe-4S domain-like 490 641 IPR045854 -
Vimu5g02641 687 Gene3D Sulfite Reductase Hemoprotein;Domain 2 401 484 - -
Vimu5g02641 687 Gene3D Sulfite Reductase Hemoprotein, domain 1 488 635 IPR045854 -
Vimu5g02641 687 FunFam Sulfite reductase [ferredoxin], chloroplastic 488 638 - -
Vimu5g02641 687 SUPERFAMILY Nitrite and sulphite reductase 4Fe-4S domain-like 193 408 IPR045854 -
Vimu5g02641 687 Pfam Nitrite and sulphite reductase 4Fe-4S domain 491 630 IPR006067 GO:0016491|GO:0020037|GO:0051536
Vimu5g02641 687 SUPERFAMILY Nitrite/Sulfite reductase N-terminal domain-like 411 483 IPR036136 GO:0016491
Vimu5g02641 687 FunFam Sulfite reductase [ferredoxin], chloroplastic 192 401 - -
Vimu5g02641 687 NCBIfam sulfite reductase, ferredoxin dependent 60 631 IPR011787 GO:0020037|GO:0050311|GO:0051539
Vimu5g02641 687 ProSitePatterns Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 541 557 IPR006066 GO:0016491|GO:0020037|GO:0051536
Vimu5g02641 687 PRINTS Sirohaem Fe-binding site signature 492 510 IPR006066 GO:0016491|GO:0020037|GO:0051536
Vimu5g02641 687 PRINTS Sirohaem Fe-binding site signature 541 559 IPR006066 GO:0016491|GO:0020037|GO:0051536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02641 K00392 - gmx:547693 1291.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02641 5 36461591 36466492 Vimu5g02641 5 36461591 36466492 ECH