Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02638 ATGGGAATGGCATGGTTGCAGTTGCAGAGAATCATCACCAAAGGAGGTGCTAATTTGATCTCAACACTCCCACACTCTACGCCTTCTTCTTCTTCTTCTAGATTCTTCTCCAAATCATCCCATTATGCTGTGAAGGTTGGAATACCAGAGTTTCTAAACGGAATTGGGAAAGGGGTTGAGTCTCACGTTCCCAAGCTCGAATCCGATATCGGAGATTTCCAGAAGCTTCTTGTCACTCGCACCCTCAAGCTCAAGAAGCTCGGCATTCCTTGCAAACATCCGCATTTCCAGTTCGTTACAATTCTGCTTGGTTTTCAAAACCAAATAATGCACAATCCTTGTTTGTTATTAGGTTTGTTCAAGATTTTGTCCTTAGAAATGCTGAATGCAGAACAAGATATTCCTGATGAGGTTCCATTAGTATCCAAGCCATTTACAGTCTATACTGCTTTAAGCCCGTCTGAAATTAAAGAACTTATTGCAATGGATCCTGGCTTGGCTAATAATTCTTCATCGCCTCGTCCCAGATGGAGAAAAGTAGCATATGGTGGTATGCAACCTGGTTATGATGACAATCATACAGATGAATCTTTCCTTGAAGGAATGGTGATGAATGCCAGTGTTGTAAAAAGGGACATGCTAAAGGTGATGCTGGACTCAGTATCCATTTCTGAATATTTATGCATTGTCGCTCTTGTTGTCTTGGTCTGGACTTGTACACTTACATCAACTATTGATGAAAATTCTCTCCTATTGATTGATGTAAGTCTGCTTGTTTCAGGCTTTTTAATTCTCCTTTTCACTCAAGAAATGCTTTCCCTTAGTCTCCTTCTCCATTATGTCCTTAATATCTCCTTTTTCATAACCGTGTTATATGTTTTGGCTCCCATCTATCAAACTCTTACAAGGTCCATTAGTTCGGATTCCATTTGGGCAGTAGCTGCATCACTTCTAGTACTTCACCTTTTTCTGCATGACTATTCAGAATCAACGGTCAAAGCCCCAGGGGTTCTTAAGAATCCTGCATTGACCAGTTGTATCTCTGTAAATGCTTCTGTAGTGGCCTCTGTTTTTATTGCTTCTCGCCTTCCATCAAGACTACATGTGTTCGCTATCATGTTATTCTCCCTTCAGGTTTTCCTTTTTGCTCCACTTGTTACTTACTGTATTAAAAAATATTCCTTCCGCATGCACCTATGCTTTTCTCTCAGTTTGATGGTCATGACCTTAAGTTTTGTGTACATGCTGCATCGCCTCCTTTTTGTGGTGCTGCTTAGTCTGTTGGTTTTTGTGAACGTGGTCTGCCCTTATTGGCTTATAAGGATTCAGGAGTACAAGTTTGAGATCAATGGACCTTGGGATGAGGCTAAACTTTGTTTTGACATTACCGACTGA 1395 0.4079 MGMAWLQLQRIITKGGANLISTLPHSTPSSSSSRFFSKSSHYAVKVGIPEFLNGIGKGVESHVPKLESDIGDFQKLLVTRTLKLKKLGIPCKHPHFQFVTILLGFQNQIMHNPCLLLGLFKILSLEMLNAEQDIPDEVPLVSKPFTVYTALSPSEIKELIAMDPGLANNSSSPRPRWRKVAYGGMQPGYDDNHTDESFLEGMVMNASVVKRDMLKVMLDSVSISEYLCIVALVVLVWTCTLTSTIDENSLLLIDVSLLVSGFLILLFTQEMLSLSLLLHYVLNISFFITVLYVLAPIYQTLTRSISSDSIWAVAASLLVLHLFLHDYSESTVKAPGVLKNPALTSCISVNASVVASVFIASRLPSRLHVFAIMLFSLQVFLFAPLVTYCIKKYSFRMHLCFSLSLMVMTLSFVYMLHRLLFVVLLSLLVFVNVVCPYWLIRIQEYKFEINGPWDEAKLCFDITD 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02638 464 Pfam Phosphatidylinositol N-acetylglucosaminyltransferase 177 454 IPR009450 GO:0006506|GO:0016020
Vimu5g02638 464 SMART IGR_2 48 108 IPR019083 -
Vimu5g02638 464 Pfam IGR protein motif 50 93 IPR019083 -
Vimu5g02638 464 PANTHER PHOSPHATIDYLINOSITOL GLYCAN, CLASS C 169 463 IPR009450 GO:0006506|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02638 Vimu-Chr5 36445157 36450229 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02638 162 464 Lipid Metabolism Gene Families AT2G34980 78.289 1.22e-137 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02638 K03859 - gmx:100796558 521.161