Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02632 ATGGCTTCTCTTCTGCTCTTCAACCACCTCCAATCTCCTCCCCTTTCACCACCACACGCCACCACCTTCAACAACACCCCAACCACAAGCCTCTCATTCTTTTCCAAAACCAAACCCCCATTCATCCTCAAATGCTCTTCCACCTCAAACCTAACCCCAAAAATGGACCAAGAAGACGTCGAAGGAAAAGAACAACAAACGTTTGATTTTGAGGCTCCCTTGAGCCAAGTGTGGAGGGAAATCCAAGGCATGAAGGATTGGAAAGGGTTGATAGAGCCAACCATGAACCCTCTCCTCCGACGAGAAATAATCCGGTACGGGGAACTGGCACAAGCATGCTACGACTCCTTCGACTTCGACCCTCATTCCAAGTACTGCGGAACCTGCAAGTACCATCCCTCCCACTTCTTCCACCAACTCAACATTCCCCACTCCGGCTACACCATCACCCGCTACCTCTACGCCACCTCCAACATCAACCTCCCCAACTTCTTCCAGAAGTCCAACGTCGCCTCCGTCTGGAGCCCCCACGCCAACTGGATGGGCTACGTCGCCGTCATCACCGACAAGGAACACATCAAACACCTTGGTCGCCGGGACATCCTAATTGCATGGCGCGGAACAGTCACCTACGTAGAATGGATCCACGACCTCAAAGACATTCTTCGTCCCGCGCTCTTCTCCAGAGACCAAACCATCAAGGTAGAATCTGGATTCCACGACTTGTACACCAAGAAAGAAGACTCCTGCACCTATTGCTCTTTCTCCGCTCGCGAACAAGTACTCTCAGAGGTTAAACGTCTTCTTAACTACTACAAAGACGAAGAGATAAGCATCACCGTCACCGGGCACAGTCTCGGTGCTGCCTTGGCCGTTCTGAGCGCGTACGACATAGCCGAGGTTAGGTTAAACGTGGTTGGCGACGGTCGCGAACGTGTTCCCGTGACGGTGTTTTCGTTTGCGGGGCCTAGGGTTGGGAATTTGAAGTTTAAAGAACGGTGTGAGGAGCTCGGGGTGAAGGTTCTGAGAGTGGTGAACGTGCACGATGTGGTACCCACCGTGCCGGGGATAATAACGAACGAGAAGTTTCTGTTTCAGAAGTACATAGAGGATGCGCTGTCGTTTCCGTGGAGCTATGCGCACGTGGGGACGGAGATTGCGTTGGATCACAGAGAGAGTCCGTTCGTGAAGGGGAACGTGGATCTGGTGAGTGCGCATAACTTGGAGGTTCATCTGCACCTCGTTGATGGCTACCATGGGAAGGAGAAGAGGTTCTGCTTGGTGTCGAAGCGTGACATAGCGCTTGTGAACAAGAGCTGTGACTTTCTCAGGAGTGAGTACGGCGTTCCGCCGCACTGGCGGCAGGACGAGAACAAGGGAATGGTGAGGGGCGGCGATGGGCGGTGGGTTCTGCCGGAGCGCCCCAGATTGGAGGCTCATCCACCAGACATGGCCCACCATCTCCAGCAAGTGCTGGACAACCACCTCGCAGGTCAGCAATTAGAAACCACTTAA 1515 0.5353 MASLLLFNHLQSPPLSPPHATTFNNTPTTSLSFFSKTKPPFILKCSSTSNLTPKMDQEDVEGKEQQTFDFEAPLSQVWREIQGMKDWKGLIEPTMNPLLRREIIRYGELAQACYDSFDFDPHSKYCGTCKYHPSHFFHQLNIPHSGYTITRYLYATSNINLPNFFQKSNVASVWSPHANWMGYVAVITDKEHIKHLGRRDILIAWRGTVTYVEWIHDLKDILRPALFSRDQTIKVESGFHDLYTKKEDSCTYCSFSAREQVLSEVKRLLNYYKDEEISITVTGHSLGAALAVLSAYDIAEVRLNVVGDGRERVPVTVFSFAGPRVGNLKFKERCEELGVKVLRVVNVHDVVPTVPGIITNEKFLFQKYIEDALSFPWSYAHVGTEIALDHRESPFVKGNVDLVSAHNLEVHLHLVDGYHGKEKRFCLVSKRDIALVNKSCDFLRSEYGVPPHWRQDENKGMVRGGDGRWVLPERPRLEAHPPDMAHHLQQVLDNHLAGQQLETT 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02632 504 Gene3D alpha/beta hydrolase 77 483 IPR029058 -
Vimu5g02632 504 CDD Lipase_3 152 391 - -
Vimu5g02632 504 FunFam Phospholipase A1-II 3 77 481 - -
Vimu5g02632 504 Pfam Lipase (class 3) 203 357 IPR002921 GO:0006629
Vimu5g02632 504 PANTHER PHOSPHOLIPASE A1-IBETA2, CHLOROPLASTIC 18 475 - -
Vimu5g02632 504 SUPERFAMILY alpha/beta-Hydrolases 103 394 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02632 Vimu-Chr5 36416883 36418397 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02632 74 492 Acyl Lipid Metabolism Gene Families AT1G51440 73.193 0.0 654
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02632 - - gmx:100795661 801.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02632 5 36416883 36418397 Vimu5g02632 5 36416883 36418397 ECH