Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02628 ATGGATAGCTTACAAGCTACTTACAAAGACGAAGAAGATGAAGAAGACGAGGTGCCACCACCCACCACCGAAACCACCGCAACTACCGCAACCACCGCCCTAGCCACAGACTCCGAATCGCCGGAAGCTCCTCCTGCCACCACCAGCACGCCCTCTGATACGCCAACTGAGCACCCCAACGATGCGCGATCGGAGCCTGACCCTTCCGACGAACTCTCAGACGACGAGGCCGCCTCCGACGGATCCAAAAAGTCCCCGAAATCCGGCCGCGAAGAAGGCGACGCTTCTGAGGAGGAGCTGCCGCCGAAGAAACAGAAGCAGCTCTCCTCTATTACGGCGGAGGCGTCGAAGGAGGACTCGCCTATGCCAGCGACGGCGGAGGGCGCCAACAATGCGACTACTCCCGCAGCGAACGGCTCTGCGCCGAACGCCAAGAAATCGAAGAAGAAGAACAACAACGTGTGGGCGACGAAGTCGACGCGGAAGGGGAAGAAGAAAAACAACCGCAACAACAACAACAACAACAACGGCAACAACAATAACCATGCAAACGGCGAGGACAACGTGCTGATTACGCCGGTTCCGCGGTTCCCCGACAAGAGCGATGACACGGCGGAGATGAAGATTTGTCTGTCGAAGGTTTACAAAGCAGAGAAGGTGGAATTGAGCGAGGACAGAATGAGTGCGGGGAGCACCAAGGGTTACAGAATGGTGAGGGCAACGCGCGGAGTCGTCGAAGGAGCGTGGTACTTCGAGATTAGGGTTGTGAAGTTGGGGGAGACTGGGCACACGCGCCTTGGGTGGTCGACTGAGAAGGGTGACTTGCAGGCTCCGGTTGGGTACGATGGGAACAGTTTTGGCTATCGGGACATTGATGGGAGTAAGATTCATAAGGCGAGTAGGGAGAAGTATGGAGAGGAAGGTTACAAGGAAGGGGATGTTATTGGTTTCTACATCAATTTGCCTGATGGCAAAAATTACGCCCCCACTACACCTCAGTTGGTCTGGTATAAAGGCCAGCGATATGTTTGCGCTCAAGATGCTAAGGAAGATCCACCCAAAGTGGTGCCTGGTAAGTTTTCAACTTTGTTATTTAGTTTTCATGATTCTCATTTACCTTTTCAGCTAGGAAACTGA 1137 0.5391 MDSLQATYKDEEDEEDEVPPPTTETTATTATTALATDSESPEAPPATTSTPSDTPTEHPNDARSEPDPSDELSDDEAASDGSKKSPKSGREEGDASEEELPPKKQKQLSSITAEASKEDSPMPATAEGANNATTPAANGSAPNAKKSKKKNNNVWATKSTRKGKKKNNRNNNNNNNGNNNNHANGEDNVLITPVPRFPDKSDDTAEMKICLSKVYKAEKVELSEDRMSAGSTKGYRMVRATRGVVEGAWYFEIRVVKLGETGHTRLGWSTEKGDLQAPVGYDGNSFGYRDIDGSKIHKASREKYGEEGYKEGDVIGFYINLPDGKNYAPTTPQLVWYKGQRYVCAQDAKEDPPKVVPGKFSTLLFSFHDSHLPFQLGN 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02628 378 Pfam SPRY domain 249 324 IPR003877 GO:0005515
Vimu5g02628 378 MobiDBLite consensus disorder prediction 76 104 - -
Vimu5g02628 378 MobiDBLite consensus disorder prediction 21 57 - -
Vimu5g02628 378 MobiDBLite consensus disorder prediction 169 187 - -
Vimu5g02628 378 MobiDBLite consensus disorder prediction 1 189 - -
Vimu5g02628 378 FunFam Protein TRAUCO 208 366 - -
Vimu5g02628 378 SUPERFAMILY Concanavalin A-like lectins/glucanases 209 325 IPR013320 -
Vimu5g02628 378 CDD SPRY_Ash2 220 322 - -
Vimu5g02628 378 ProSiteProfiles B30.2/SPRY domain profile. 189 372 IPR001870 -
Vimu5g02628 378 Coils Coil 376 378 - -
Vimu5g02628 378 MobiDBLite consensus disorder prediction 126 158 - -
Vimu5g02628 378 Gene3D - 207 365 IPR043136 -
Vimu5g02628 378 SMART SPRY_3 246 371 IPR003877 GO:0005515
Vimu5g02628 378 PANTHER SET1/ASH2 HISTONE METHYLTRANSFERASE COMPLEX SUBUNIT ASH2 11 359 IPR037353 GO:0048188|GO:0051568
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02628 K14964 - gmx:100816796 461.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02628 5 36390123 36391259 Vimu5g02628 5 36390123 36391259 ECH