Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02621 ATGTTTTTGGTGAGACCCATTTTCCGAGGACCCTCCCTCTGGGCGTTGCACTCTTCCCATGCTTGTTTCTCTGCCTCAGCGGCTGCAGTTCAAGCTGAGAGAACCATCAAAGATGGGCCAAGAAACGATTGGAGCCGAGACGAAGTCAAATCCATCTACGACTCTCCCATTCTCGATCTTCTCTTCCATGGGGCTCAAGTTCATAGACATGCGCATAACTTCAGGGAAGTGCAGCAATGTACTCTTCTGTCTATCAAAACAGGAGGGTGCAGTGAAGATTGTTCTTATTGTCCTCAATCATCTAAGTATAATACCGGAATCAAAGGCCAACGCCTTATGAACAAGGAAGCTGTTCTAGAGTCTGCAAAGCGGGCAAAAGAGGCTGGGAGCACTCGCTTTTGTATGGGTGCTGCGTGGAGAGATACACTAGGAAGAAAGACCAACTTCAACCAGATCCTTGAATATGTGAAAGACATTAGGGAAATGGGGATGGAGGTTTGTTGTACCCTTGGCATGCTGGAGAAACAGCAGGCTCTTGAACTCAAGAAGGCAGGTCTCACTGCCTATAATCACAATCTTGACACCTCGAGAGAATATTATCCAAACATCATCACAACAAGGACTTATGATGAGCGCCTAAAAACACTTGAGTTTGTTCGTGATGCAGGGATCAATGTCTGTTCTGGAGGAATTATAGGACTTGGAGAAGCAGAGGAGGACCGTGTAGGTTTGTTACATACATTGTCAACACTTCCCACCCATCCTGAGAGTGTTCCTATTAATGCACTTGTTGCTGTGAAGGGAACCCCACTTGAGAATCAAAAGCCTGTTGAAATATGGGAGATGATTCGCATGATAGCCACAGCACGTATAATAATGCCAAAATCAATGGTCAGGCTATCTGCTGGCAGAGTCCGGTTCTCCATGCCTGAACAGGCATTGTGTTTTCTTGCTGGTGCAAATTCCATATTCACTGGTGAAAAGCTTCTCACTACACCTAACAATGACTTTGATGCTGATCAACTCATGTTCAAAGTTCTTGGACTTCTCCCAAAAGCTCCAAGCTTTCATGAAGGTGAAACTAGTGAGACAGAAGATTATAAGGAAGCAGCTTCTTCTAGTTGA 1125 0.4516 MFLVRPIFRGPSLWALHSSHACFSASAAAVQAERTIKDGPRNDWSRDEVKSIYDSPILDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSKYNTGIKGQRLMNKEAVLESAKRAKEAGSTRFCMGAAWRDTLGRKTNFNQILEYVKDIREMGMEVCCTLGMLEKQQALELKKAGLTAYNHNLDTSREYYPNIITTRTYDERLKTLEFVRDAGINVCSGGIIGLGEAEEDRVGLLHTLSTLPTHPESVPINALVAVKGTPLENQKPVEIWEMIRMIATARIIMPKSMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLLPKAPSFHEGETSETEDYKEAASSS 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02621 374 SMART MiaB 80 288 IPR006638 GO:0003824|GO:0051536
Vimu5g02621 374 SFLD biotin synthase like 38 355 - -
Vimu5g02621 374 Pfam Radical SAM superfamily 87 245 IPR007197 GO:0003824|GO:0051536
Vimu5g02621 374 Hamap Biotin synthase [bioB]. 42 352 IPR002684 GO:0004076|GO:0009102
Vimu5g02621 374 MobiDBLite consensus disorder prediction 355 374 - -
Vimu5g02621 374 PIRSF Biotin_synth 25 358 IPR024177 -
Vimu5g02621 374 ProSiteProfiles Radical SAM core domain profile. 75 304 IPR007197 GO:0003824|GO:0051536
Vimu5g02621 374 Pfam Biotin and Thiamin Synthesis associated domain 259 349 IPR010722 -
Vimu5g02621 374 SUPERFAMILY Radical SAM enzymes 42 351 - -
Vimu5g02621 374 Gene3D Aldolase class I 41 353 IPR013785 -
Vimu5g02621 374 FunFam Biotin synthase 41 354 - -
Vimu5g02621 374 NCBIfam biotin synthase BioB 43 349 IPR002684 GO:0004076|GO:0009102
Vimu5g02621 374 SFLD biotin synthase 38 355 IPR024177 -
Vimu5g02621 374 PANTHER BIOTIN SYNTHASE 24 372 IPR002684 GO:0004076|GO:0009102
Vimu5g02621 374 CDD Radical_SAM 87 287 - -
Vimu5g02621 374 SMART BATS_2 259 351 IPR010722 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02621 K01012 - gmx:100808225 699.123