Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02608 ATGGGGAGAGTGGTGGTGGGAGTAACGGTGGGTTTGGCGACGGTGGCGTGTGCGGTGGCGGCGGTGGTGGTTGGAGGGAGAATGAGGAGCAGGGGGAAGTGGAAGAGAGTGGTGAGAGTGTTGAGGGAGGTTGAGGAAGGGTGTGAAAGTTCTGTTGAGAGGCTGAGGCAAGTGGTGGATGCTATGGCGGTTGAGATGCACGCAGGGTTGGCTTCAGAAGGTGGTTCAAAGCTCAAAATGCTTCTCACCTATGTTCATAATCTCCCTGATGGGACTGAGAAAGGGACATATTATGCACTAGACCTTGGGGGTACAAATTTTAGGGTTTTGCGGGTTCATTTACACGATCAGCAATCCTCTGTTTTGGAACATGAAGTAGAGCGACAAGCCATCCCTCAACATCTAATGAGCAGCACAAGCAAGGATCTCTTTGATTTCATTGCTTCATCTTTAAAGGAATTCATCGAGAAAGAAGGAGACGGTTCTGAGCTTTCAATGGACAGAAGAAGGGAACTTGGATTCACATTTTCTTTCCCTGTGAAACAAACGTCAGTTTCTTCAGGCATTTTAATTAAATGGACAAAAGGTTTTTCCATTGTAGATATGGTAGGAGTAGATGTTCCTGCTTGTTTGCAGGAAGCATTGATACGAACGGGACTAGACGTGCGGGTTGCTGCCTTGGTCAATGATACTGTGGGAACACTGGCTCTTGGACATTATCATGACTCAGATACAGTTGCTTCCGTAATAATTGGCACCGGTACCAATGCTTGCTATTTGGAACGGGTTGATGCTATTATAAAGTGTCAAGGTCATCTTACATCATCAGGATACATGGTTGTAAATATGGAATGGGGAAATTTTTGGTCATCTCATTTACCAAGAACATCATATGATATTGATTTAGACTCCGAAAGCCCTAATCCAAATGATCAGGGTTTTGAGAAAATGATATCAGGAATGTATCTTGGTGACATTGTGAGGAGAGTCATTTTAAGGATGTCGCTGGAGTCAGATATGTTTGGACATGTTTCTTCCAAGCTTAATATGCCATTTACGCTGAGGACTCCTATGATGGCTGCTATGCACGAGGATGATTCTCCTGACTTGAGAGAAGTAGCAAGAATCCTCAGAGACATCCTTGAGATTCCTGATGTTCCTTTGAAGTTAAGAAAAGTTGTGGTGAAGGTTTGTGATGTGGTGACTCGCAGAGCTGCACGATTGGCAGCTGCTGGTATTGTTGGTATCTTGAAGAAGATTGGTAGGGATGGAAGTGGTGGCATCACAAGTGGACGTAGAAGTGATGTGAAAATGAAAAGAACAGTTGTTGCAATTGAAGGAGGTTTATATTCTAGCTATACATTGTTTAGGGAGTATTTGCATGAAGCTTTGAACGAAATATTGGGGGAAGATATTGCCAAGCATGTAATTCTTAAGGTCACTGAAGATGGATCAGGCGTTGGAGCAGCGCTGCTTGCTGCCTCGCATTCATTCCTATGA 1500 0.442 MGRVVVGVTVGLATVACAVAAVVVGGRMRSRGKWKRVVRVLREVEEGCESSVERLRQVVDAMAVEMHAGLASEGGSKLKMLLTYVHNLPDGTEKGTYYALDLGGTNFRVLRVHLHDQQSSVLEHEVERQAIPQHLMSSTSKDLFDFIASSLKEFIEKEGDGSELSMDRRRELGFTFSFPVKQTSVSSGILIKWTKGFSIVDMVGVDVPACLQEALIRTGLDVRVAALVNDTVGTLALGHYHDSDTVASVIIGTGTNACYLERVDAIIKCQGHLTSSGYMVVNMEWGNFWSSHLPRTSYDIDLDSESPNPNDQGFEKMISGMYLGDIVRRVILRMSLESDMFGHVSSKLNMPFTLRTPMMAAMHEDDSPDLREVARILRDILEIPDVPLKLRKVVVKVCDVVTRRAARLAAAGIVGILKKIGRDGSGGITSGRRSDVKMKRTVVAIEGGLYSSYTLFREYLHEALNEILGEDIAKHVILKVTEDGSGVGAALLAASHSFL 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02608 499 FunFam Phosphotransferase 222 482 - -
Vimu5g02608 499 PANTHER HEXOKINASE 17 496 IPR001312 GO:0001678|GO:0004396|GO:0005524|GO:0005536|GO:0005975
Vimu5g02608 499 Gene3D - 61 482 - -
Vimu5g02608 499 Gene3D - 83 493 - -
Vimu5g02608 499 PRINTS Hexokinase family signature 98 114 - -
Vimu5g02608 499 PRINTS Hexokinase family signature 224 240 - -
Vimu5g02608 499 PRINTS Hexokinase family signature 247 261 - -
Vimu5g02608 499 PRINTS Hexokinase family signature 312 334 - -
Vimu5g02608 499 PRINTS Hexokinase family signature 172 197 - -
Vimu5g02608 499 PRINTS Hexokinase family signature 394 416 - -
Vimu5g02608 499 FunFam Phosphotransferase 83 251 - -
Vimu5g02608 499 Pfam Hexokinase 41 240 IPR022672 GO:0005524|GO:0005975|GO:0016773
Vimu5g02608 499 SUPERFAMILY Actin-like ATPase domain 244 495 IPR043129 -
Vimu5g02608 499 ProSiteProfiles Hexokinase domain profile. 35 494 IPR001312 GO:0001678|GO:0004396|GO:0005524|GO:0005536|GO:0005975
Vimu5g02608 499 Pfam Hexokinase 248 494 IPR022673 GO:0005524|GO:0005975|GO:0016773
Vimu5g02608 499 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Vimu5g02608 499 ProSitePatterns Hexokinase domain signature. 172 197 IPR019807 GO:0004396|GO:0005524|GO:0006096
Vimu5g02608 499 CDD NBD_sugar-kinase_HSP70_actin 99 261 - -
Vimu5g02608 499 SUPERFAMILY Actin-like ATPase domain 27 242 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02608 Vimu-Chr5 36259524 36264113 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02608 K00844 - gmx:100813589 825.083