Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02607 ATGGCTACTAACACCATTCATGGCAACAATGAATCTGCTCAACCCAACAACATTGCTTCCTCAAAGCAGCCTCTTCCTCCTGCCAAGACAGTTGATTCTCAATCTGTTCTCAGAAGGCTGCAATCTGAATTGATGGCTTTGATGATGAGTGGAGATTCTGGGATATCTGCATTTCCCGAAGAGGACAACATATTTTTCTGGAAAGGAACAATCAGTGGAAGCAAAGATACTGTGTTTGAAGGCACAGAGTATAAGCTGTCTCTCTCTTTTCCCAATGATTACCCTTTTAAGCCTCCAAAAGTCAAGTTTGAAACAACCTGCTTCCACCCCAATGTTGATGTGCATGGCAATATATGCTTAGACATACTCCAGGATAAATGGTCATCTGCATATGATGTCAGAACAATTCTTATATCCATCCAAAGTCTGCTTGGAGCAATCAAGAAGAATACAGGAAGACGGTTGAGAAGTTGTATAAATCTGCAAATTGATGAATCTAGTGGGAGAAAAGATGAAGCCACAGTTGTTTTTCTCGGTGTCCTTTTCTGA 549 0.4098 MATNTIHGNNESAQPNNIASSKQPLPPAKTVDSQSVLRRLQSELMALMMSGDSGISAFPEEDNIFFWKGTISGSKDTVFEGTEYKLSLSFPNDYPFKPPKVKFETTCFHPNVDVHGNICLDILQDKWSSAYDVRTILISIQSLLGAIKKNTGRRLRSCINLQIDESSGRKDEATVVFLGVLF 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02607 182 Pfam Ubiquitin-conjugating enzyme 39 150 IPR000608 -
Vimu5g02607 182 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 35 182 IPR000608 -
Vimu5g02607 182 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 38 149 - -
Vimu5g02607 182 SMART ubc_7 38 181 - -
Vimu5g02607 182 CDD UBCc 38 144 IPR000608 -
Vimu5g02607 182 MobiDBLite consensus disorder prediction 1 32 - -
Vimu5g02607 182 Gene3D Ubiquitin Conjugating Enzyme 1 169 IPR016135 -
Vimu5g02607 182 SUPERFAMILY UBC-like 32 146 IPR016135 -
Vimu5g02607 182 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 108 123 IPR023313 -
Vimu5g02607 182 FunFam ubiquitin-conjugating enzyme E2 20 29 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02607 Vimu-Chr5 36257029 36258369 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02607 37 144 Miscellaneous Gene Families AT3G17000 31.858 2.39e-13 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02607 K06688 - gmx:100305664 268.47