Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02602 ATGGGAAGTGGCAGCACGTTTTTGACACTGACAATGTTAGTGGTCGCAGGATGTTTAATGTGTAACACAAAAGAGGTTTATGCACAATGTGGAGGAAGTTTGCCAGATCTGATATCGCAGTGTCAACAGTATGTGCAGAAAACAGGGCCAAAGATTAAACCTTCAGCAGCGTGCTGTGCAGTGCTGAAACAATTCAATGTGCCATGTGCTTGCAAACTCGTTACCAAAGAAGTTGCAAGCCTTGTCAGTATTCCAAAAGTTGTGTTCGTCGGACGCTCTTGTGGTTTGAATCTTCCCGCAGGAATGCATTGTGGAGCTGTTGTAATCCCGCCGGCCATGAAGTGA 345 0.458 MGSGSTFLTLTMLVVAGCLMCNTKEVYAQCGGSLPDLISQCQQYVQKTGPKIKPSAACCAVLKQFNVPCACKLVTKEVASLVSIPKVVFVGRSCGLNLPAGMHCGAVVIPPAMK 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02602 114 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN 10 112 - -
Vimu5g02602 114 CDD nsLTP_like 30 99 IPR044741 -
Vimu5g02602 114 Pfam Probable lipid transfer 12 104 IPR016140 -
Vimu5g02602 114 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 36 105 IPR036312 -
Vimu5g02602 114 Gene3D - 27 101 IPR036312 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02602 Vimu-Chr5 36236678 36237159 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02602 1 112 Acyl Lipid Metabolism Gene Families AT4G33550 41.880 7.61e-26 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02602 - - var:108339486 204.142