Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02598 ATGGAGTCACCGAGTTCAACGTTTGGCTCGTGCGTGAGTTGCGATAGAGACTACAACGTTGAACTTTACACCACAACCGATTCCGTCACCATGAACACGCTCCTCCGATCCACTCTGAGGACTAAGGCACGATTGAATCTGCTCGTGTTTGTTTTCCCCTATCTAGATTCTGAGTTCCGGTTATGCGAAACTGACTTGTGCTTATGGATTAGATTGATGAAGCATAATGTTTCATCTCTAGCATATGCTGCTGTTTCCAGAGGTGTTCAGGAAAATTTTCTTCAGGCTCCCTTGTGGTCTAGATCAAATAGCACGGAGTCTTCCTTGAAAAGGGATGACTCAGCCAATGAAGTGAAAAGTGGTCCGGGTCATAGTATGCTGGCTCCTTTCACGGCTGGGTGGCAGTCTACTGATTTGCATCCTCTAGTTATAGAAAAGTCAGAGGGAAGCTATGTGTATGATACTAATGGTAAGAAATATCTTGACGCACTTGCTGGTTTATGGGCCACCGCTTTAGGGGGAAGTGAGTCACGCCTTGTGGATGCTGCTGTCGCACAATTAAAGAAGTTGCCATTTTACCATTCCTTTTGGAATCGAACCACCGTACCTTCTCTGTTGAAAAAGTGCCTTTGGGACAATTCTTTATATTTGTTCACCGCGGGGGCGGGGGTTTGGGATGAAACTGTGGAACTAGCCAAGGAACTCCTAGAAATATTCACAGCCAGAAAAATGGCAAAAGCTTTTTTTGTTAACAGTGGATCAGAAGCCAATGACACTCAGGTGAAACTTGTATGGTATTATAACAATGCGCTTGGAAGGCCAAATAAGAAGAAGTTCATAGCTCGTGCTAAATCTCTTCCGGCTCTTCATCAAAAATTTGATTTACCAGCACCTTTTGTATTGCATACTGACTGTCCACACTACTGGCGGTATCACCTTCCAGGTGAGACAGAGGAAGAATTTTCAACCAGATTGGCCAACAGTTTAGAGCAGCTGATTCTGAAAGAGGGGCCAGAGACAATAGCTGCATTTATTGCTGAACCTGTAATGGGGGCAGGAGGTGTAATACCTCCACCAGCAACTTATTTTGAGAAGGTTCAAGCTGTTGTCAAGAAGTATGACATTCTTTTTATTGCTGATGAGGTAATCTGTGCCTTTGGAAGGCTTGGGACAATGTTTGGATGTGACAGGTACAACATTAAGCCGGACCTTGTATCCCTGGCTAAGGCATTGTCTTCTGCATATTTGCCAATTGGAGCTGTGCTTGTGAGCCCAGAAGTTTCAGAAGTTATACACGCACAAAGTAACAAACTTGGTTCATTTTCTCATGGGTTTACCTATTCTGGGCACCCCGTAGCCTGTGCTGTTGCAATTGAAGCTCTCAAAATCTACAAGGAAAGAAATATTGTTGACCAGGTGAGCAAGATCTCCCAAAGGTTCCAAGATGGCATAAGAACTTTTTCTGACAGTCCCATCATTGGAGAGATACGGGGAGTTGGCTTGATTTTGGGCACCGAGTTCACAGACAACAAATCACCCAATGATCCGTTTCCTTCTGAATGGGGAATAGGTGCCTATTTTGGAGCTCAATGTGAGAAGCATGGGATGTTAGTTCGTGTAGCGGGAGATAACATCATGATGTCTCCACCATATATTATTTCTCCTGAAGAAGTTGAGACGTTAATCAGTATTTATGGGAAAGCTTTGAAAGAAACGGAAAAGAAGGTGCAAGAGCTCAAGTCTCAGCGCAAGTAG 1755 0.441 MESPSSTFGSCVSCDRDYNVELYTTTDSVTMNTLLRSTLRTKARLNLLVFVFPYLDSEFRLCETDLCLWIRLMKHNVSSLAYAAVSRGVQENFLQAPLWSRSNSTESSLKRDDSANEVKSGPGHSMLAPFTAGWQSTDLHPLVIEKSEGSYVYDTNGKKYLDALAGLWATALGGSESRLVDAAVAQLKKLPFYHSFWNRTTVPSLLKKCLWDNSLYLFTAGAGVWDETVELAKELLEIFTARKMAKAFFVNSGSEANDTQVKLVWYYNNALGRPNKKKFIARAKSLPALHQKFDLPAPFVLHTDCPHYWRYHLPGETEEEFSTRLANSLEQLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDRYNIKPDLVSLAKALSSAYLPIGAVLVSPEVSEVIHAQSNKLGSFSHGFTYSGHPVACAVAIEALKIYKERNIVDQVSKISQRFQDGIRTFSDSPIIGEIRGVGLILGTEFTDNKSPNDPFPSEWGIGAYFGAQCEKHGMLVRVAGDNIMMSPPYIISPEEVETLISIYGKALKETEKKVQELKSQRK 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02598 584 Gene3D Aspartate Aminotransferase, domain 1 102 203 IPR015422 GO:0003824
Vimu5g02598 584 PANTHER ADENOSYLMETHIONINE-8-AMINO-7-OXONONANOATE AMINOTRANSFERASE 105 571 - -
Vimu5g02598 584 FunFam Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, probable 216 467 - -
Vimu5g02598 584 ProSitePatterns Aminotransferases class-III pyridoxal-phosphate attachment site. 377 414 IPR005814 GO:0008483|GO:0030170
Vimu5g02598 584 Pfam Aminotransferase class-III 140 568 IPR005814 GO:0008483|GO:0030170
Vimu5g02598 584 SUPERFAMILY PLP-dependent transferases 126 571 IPR015424 -
Vimu5g02598 584 Coils Coil 562 584 - -
Vimu5g02598 584 FunFam Class III aminotransferase 127 175 - -
Vimu5g02598 584 CDD OAT_like 136 569 IPR005814 GO:0008483|GO:0030170
Vimu5g02598 584 Gene3D Aspartate Aminotransferase, domain 1 470 569 IPR015422 GO:0003824
Vimu5g02598 584 Gene3D - 226 469 IPR015421 GO:0003824
Vimu5g02598 584 MobiDBLite consensus disorder prediction 104 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02598 Vimu-Chr5 36188893 36197453 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02598 K16871 - gmx:100815181 869.766