Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02597 ATGCAGTGCTATAAAGAAGCAGACATGGAAGAAGAGACCAAAGTCGTATCAGAGCTTCCAGGGACAAAGGCTGTTGTGGAGGCAGATCATAAGAATGACGCCATCAAGGAGACAAATGGAGGTTTGTCAAGTGAAGTAAAGAAAGAAGAGGAAGAGAATGCCTTAGATGGAGAATTCATAAAAGTTGAGAAAGAAGAGAATGCCACAGATGATAAGTCCCACAAAACTGAAAGAAGCTCAGATTCTCCGAGCAGAGAATTTCTAGAAGCTCAAGAGAGGATACGGGAACTTGATGTTGAACTTCAAAGACTAACAGAATCGTTGAAGACCTCTGAGCATGAAAACAATCACCTGAGGGGAGAGATCTCAGTTACACAACAGAAATTGGAGGAAAGTGGTAAGAAATACGAAGAGCTTGAACTGAGTCACAAGAAATTGCAAGAGCAGACGGTTGAAGCCGAGAATAAATATAATCAGCAGCTGAGCAATCTTGAAGAGGCACTTCAGAGTCAAGAAGTGAAGCAAAAGGAGCTTCTTCATGTGAAGGAAGCATTCGACGATATTAACCTTGAGCTTGAAAACTCCAGAAAGAAGATGCAGGAATTGGAGGATGAGCTGAAACTTTCAGCAGACGAGGCTCGGAAATTTGAGGAACTTCATAAGCAGAGTGGATCACATGCTGAATCCGAGGGAAAGAAGGCCTTAGAATTTGAGAGACTACTTGAAGAAGCCAAACTGACTGCAAAAGGAATGGAAGATGAGATGGCATCCCTTAAAGAAGAACTGAAAGGTGTTTATGATAAGATTTCAGAAAATCAAAAGATTGAAGAAGCACTTAAAACAACCACAGCTGAACTTTCTACTATCCAAGAGGAGTTGACACTTTCAAAATCACAGTTGTTGGAAGTTGAGAAAAGACTGTCTTCAAGGGACTCTTTAGTGGATGACTTGACTCGGGAAGTAAACCTGATAAGGACATCAGAAACACAGCTAAAGGAAGACATGTCAGCACTTCAAAATCTCTTGGCCACATCGAAGGAAGAACTGCAAGAAAAAAATTCTGAATTGGAAACAGCAAGGTCCAAATTGCGGGAGGAGGAAAAATTGAGGGAATCAATTGAAGCTTCCCTCAAGAATCAAGAAACGCAGTTTCTCAATGTACAAGAGGAGCTGACTAAGCTTAAAACAGAAAATGGAACTCTTGAAGCAACCGTGGAAGATCTAACCCTTAATTCGAAGAAGTTTGAGGAGTTATGCGCTGATTTAGAGGGAAAACTAAAGCTATCAGATGAAAACTTTCTTAGAACAGATTCTCTTTTATCTCAGGCGCTTTCAAACAATGCAGAGCTCGAGCTGAAGGTGAAATCGCTAGAAGATCTCCATAATGAATCTGGCGCTGCTGCAGCTACTGCTACTCAAAGGAGCCTTGAACTTGAGGGACATATTCAGACTTCCGTTGAAGCTGCAGAAGTTGCAAAAGCACAATTGAGGGACCTGGAAACACGCTTCATAGCAGCAGAGCAGAAGAACGTGGAGCTTGAGCAACAATTAAACTTGCTACAATTGAAAACCAATGATGCTGACAGAGAAGTAACTGAATTGTCCGAAAAAATATCCCATCTCAATGCTAAATTGGAAGAGACCGAGAAAGAGAAGAATCTTCTTAACAACCAATTGCAAGAGTATATGGAAAAGGTCGTTCAACTTGAATCAGACTTGAATCAATCATCTTTGCGGAGTTCAACATTGGAGGAGGAGCTAAAGAAAGTCAATGACAAATGTTCTGAGCATGAAGACCGAGCCACTATGAACCATCAGCGTAGCCGAGAACTGGAAGATCTAATCCAGAGCTCTAACTCCAAATTGGAAGATTCTGGTAAAAAGGTGAGTGAGTTGGAGTTGTTACTTGAAGCAGAGAAATACAGAATTCAGGAACTTGAACAACAAATAAGCACATTAGAAGACAAATGCAGGGTTTCAGAAGAGCAAAACGATAAATACCTCAACGATTTGTCTAATTTAACATCAAAACTTGACGCAATTCAGACACGAACGTCAACCCTCGAAGTTACACTGCAAGCAGCTAATGAAAGAGGAAAGGAGTTGGAAGATTCTCTGAATTCGATGACGGATGAAAAGAAGAAGTTAGAAGATGCTTCTAGCAGTTTGAATGAGAAGCTTGCTGAGAAAGAAAACCTATTGGAAATTTTGAGGGATGATTTAAATCTAACACAAGGTAAATTGCAAAGCACTGAAAGTGATCTCAGGGCTGCTGAATTGAGAGAGAGTGATATAATTGAGAAACTTAAAGCTTCTGAAGAAAATCTCGTCATAAGAGGAAGAGATATAGAGGAAACTGCTACAAGACACTCGGAACTTCAATTGTTGCACGAGTCTCTGACGAGAGATGCAGAACAGAAACTCCAAGAAGCTATAGAAAAATTCAGCAACAAGGATTCTGAGGTTCAGTCTCTGCTTGAGAAAATTAAGATTTTGGAGGAACTGATTACACGGGGTGGGGAACAGTCTACATCCTTGAAGAATCAACTTGAAGAGAGTTTGAGTAAACTTTCTTCTTTGGAAAGTGAAAACGAAGTTTTGAAACGACAAGTTCTAGAAGCCGAGAGCAAGATTTCTCAGTCTTCTTCCCAAAATGAATTATTGGTCGGAACAAACATCGACCTGAGAACCAAGATTGATGAACTTGAGGAATCACTGAACCGTACACTATCAGAGAAGGATGCCACTTCTCAAGAACTTGTGGCCCATAAGAACAGTCTAGCTGAATTGAATGATTTACAATCAAAATCCACTCAAATTCAAAGTGCAAATGAATCCCGCATTCTAGAAGTAGAATCACAATTACAAGAAGCGTTGCAGAGGCATACTGAGAAGGAATCAGAAACCAAAGTGTTGAATGAGAAGCTGAATACACTAGAGAACCAAATAAAGCTTTTCGAAGAACAGGCACTAAACGCAGTTGTAGCTTCTGGAACTCAAAAAGATGAGCTGGAGGAGAGTCTCATAAAATTAAAGCACCTTCAAACTGTCATTGAGGAACTGCAAAACAAGTCACTCCAACATGAAAAAGAAACTTCTGGGCTAAATGATGAAAACTCAAAGCTTAATCAGGAAATAGCTATCTATGAATCCAAATTAAGTGATTTGCAGTCAAAGCTCTCTGCAGCACTTGCTGAGAAGGATGAAACAGCTAAAGAGATACTCACCTCGAAGAATGCAATCGAAGAATTAGTGTCAAAGCATAGTGCAGAGGTGCAGACGCTGAATTCACAGGTACATGAGATACAGACTATTCGTATTGATATTTCTTTACTTTTCGTTCTTCCATTCCTATTGGTGTTATCTTCAGTGATTGATGAGAAGAACTTGCTAAATGAGACTAATCAGGATATAAAGAAGGAACTTCAGTCTTTTATACTTGACCTTGAAGAGAAGTTGAAGGAACAACAGAAAATTGAAGGCTCTCTGAGATATGAGATCGAAATTCTCAAAATGGAGATTGCTGAGAAATCTGAACTAAATGAACAGGTTGGAAGTGTTCAAGCTGCTGCTTCTCAAAGAGAAGCAGAATTAAATTCAAAACTGGTAGACTATGAACAAACACTCAATGATAGAAATGTGCTGAATGAGAAGGTTGCAGAACTTGAGAAAGACTTGCAACTTGCACGGGATACTCTAGCTAACCAGAAAGGAGCAGAATCTCAGAAGTTGGAACTAGAGACAGCCCTGAAGAATTCTGTTGAAGAACTTGAAATTAAGAAAAAAGATATCTCTCTTCTACAGAAACAAGTGGCAGATCTAGAGCAGAAATTGCAACTGGCTAGCGAAAAATCTCCAGTTAAGGGTGATGAGGGTGTTGATCAGAAAGAAGGGTTGGAAGTGAAGTCCAGGGACATTGGATCAATCCTCTCGAGTCCATCGAAAAGGAAAAGCAAGAAAAAGTCAGAAGTATCAAGTCCTCAAACATCATCTGCGTCCGAGACTCGTCTTCAAAATGGCCAGGGTTCGTCTGTCATAAATTACAAGTTCATCTTTGGAGTAGCTATTGTGTCCATTGTCTTTGGCATAATTCTTGGGAAGCGTTACTAG 4110 0.4005 MQCYKEADMEEETKVVSELPGTKAVVEADHKNDAIKETNGGLSSEVKKEEEENALDGEFIKVEKEENATDDKSHKTERSSDSPSREFLEAQERIRELDVELQRLTESLKTSEHENNHLRGEISVTQQKLEESGKKYEELELSHKKLQEQTVEAENKYNQQLSNLEEALQSQEVKQKELLHVKEAFDDINLELENSRKKMQELEDELKLSADEARKFEELHKQSGSHAESEGKKALEFERLLEEAKLTAKGMEDEMASLKEELKGVYDKISENQKIEEALKTTTAELSTIQEELTLSKSQLLEVEKRLSSRDSLVDDLTREVNLIRTSETQLKEDMSALQNLLATSKEELQEKNSELETARSKLREEEKLRESIEASLKNQETQFLNVQEELTKLKTENGTLEATVEDLTLNSKKFEELCADLEGKLKLSDENFLRTDSLLSQALSNNAELELKVKSLEDLHNESGAAAATATQRSLELEGHIQTSVEAAEVAKAQLRDLETRFIAAEQKNVELEQQLNLLQLKTNDADREVTELSEKISHLNAKLEETEKEKNLLNNQLQEYMEKVVQLESDLNQSSLRSSTLEEELKKVNDKCSEHEDRATMNHQRSRELEDLIQSSNSKLEDSGKKVSELELLLEAEKYRIQELEQQISTLEDKCRVSEEQNDKYLNDLSNLTSKLDAIQTRTSTLEVTLQAANERGKELEDSLNSMTDEKKKLEDASSSLNEKLAEKENLLEILRDDLNLTQGKLQSTESDLRAAELRESDIIEKLKASEENLVIRGRDIEETATRHSELQLLHESLTRDAEQKLQEAIEKFSNKDSEVQSLLEKIKILEELITRGGEQSTSLKNQLEESLSKLSSLESENEVLKRQVLEAESKISQSSSQNELLVGTNIDLRTKIDELEESLNRTLSEKDATSQELVAHKNSLAELNDLQSKSTQIQSANESRILEVESQLQEALQRHTEKESETKVLNEKLNTLENQIKLFEEQALNAVVASGTQKDELEESLIKLKHLQTVIEELQNKSLQHEKETSGLNDENSKLNQEIAIYESKLSDLQSKLSAALAEKDETAKEILTSKNAIEELVSKHSAEVQTLNSQVHEIQTIRIDISLLFVLPFLLVLSSVIDEKNLLNETNQDIKKELQSFILDLEEKLKEQQKIEGSLRYEIEILKMEIAEKSELNEQVGSVQAAASQREAELNSKLVDYEQTLNDRNVLNEKVAELEKDLQLARDTLANQKGAESQKLELETALKNSVEELEIKKKDISLLQKQVADLEQKLQLASEKSPVKGDEGVDQKEGLEVKSRDIGSILSSPSKRKSKKKSEVSSPQTSSASETRLQNGQGSSVINYKFIFGVAIVSIVFGIILGKRY 1369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02597 1369 Coils Coil 129 181 - -
Vimu5g02597 1369 Coils Coil 482 600 - -
Vimu5g02597 1369 MobiDBLite consensus disorder prediction 1324 1338 - -
Vimu5g02597 1369 Coils Coil 843 884 - -
Vimu5g02597 1369 SUPERFAMILY Tropomyosin 423 617 - -
Vimu5g02597 1369 Coils Coil 328 425 - -
Vimu5g02597 1369 Coils Coil 1078 1098 - -
Vimu5g02597 1369 Coils Coil 234 268 - -
Vimu5g02597 1369 Coils Coil 32 52 - -
Vimu5g02597 1369 Coils Coil 272 292 - -
Vimu5g02597 1369 Coils Coil 1004 1073 - -
Vimu5g02597 1369 Coils Coil 692 775 - -
Vimu5g02597 1369 Coils Coil 440 460 - -
Vimu5g02597 1369 Coils Coil 629 684 - -
Vimu5g02597 1369 Coils Coil 1250 1284 - -
Vimu5g02597 1369 Coils Coil 948 989 - -
Vimu5g02597 1369 MobiDBLite consensus disorder prediction 1309 1338 - -
Vimu5g02597 1369 MobiDBLite consensus disorder prediction 1 17 - -
Vimu5g02597 1369 MobiDBLite consensus disorder prediction 1 91 - -
Vimu5g02597 1369 Coils Coil 185 219 - -
Vimu5g02597 1369 Coils Coil 808 828 - -
Vimu5g02597 1369 PANTHER EARLY ENDOSOME ANTIGEN 9 1369 - -
Vimu5g02597 1369 Coils Coil 87 121 - -
Vimu5g02597 1369 SUPERFAMILY Tropomyosin 595 855 - -
Vimu5g02597 1369 SUPERFAMILY Tropomyosin 229 427 - -
Vimu5g02597 1369 Coils Coil 1205 1239 - -
Vimu5g02597 1369 MobiDBLite consensus disorder prediction 24 91 - -
Vimu5g02597 1369 MobiDBLite consensus disorder prediction 108 133 - -
Vimu5g02597 1369 Coils Coil 1121 1159 - -
Vimu5g02597 1369 Coils Coil 892 919 - -
Vimu5g02597 1369 Gene3D - 538 694 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02597 - K20283 gmx:100792883 1974.13