Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02588 ATGGCAGAACGGACCAATCTAATGTTTCACAATAAAGTGATAGGTGGAACTGCCATTAAACGACTTATTAGCAGATTAATAGATCACTTCGGAATGGCATATACATCACATATCCTGGATCAAGTCAAGACTCTGGGATTCCGCCAAGCTACGGCTACATCCATTTCATTAGGAATTGATGACCTTTTAACAATACCTTCTAAAGGATGGCTAGTCCGAGATGCTGAACACCAAAATTTGATTTTGGAAAAACAGCATCATTATGGAAATGTACATGCAGTAGAAAAATTACGCCAATCCATTGAGATATGGTATGCTACAAGTGAATATTTTCGACAAGAAATGAATCCTAATTTTAGAATGACCGATCCTTTTAATCCAGTCCATATAATGTCCTTTTCGGGAGCTAGAGGAAATGCATCTCAAGTACACCAATTAGTAGGTATGAGGGGATTAATGTCGGATCCACAAGGACAAATGATTGATTTACCTATTCAAAGCAATTTACGCGAAGGGCTATCTTTAACAGAATATATAATTTCTTGCTACGGAGCTCGTAAAGGGGTTGTAGATACTGCTGTACGAACATCAGATGCTGGATATCTTACACGTAGACTTGTTGAAGTGGTTCAACATATTGTTATACGTCGAACAGATTGTGGTACCATTCGAGGAATTTCAGTAAATACCCAGAATGAAATGATGCCGGAAAGGAGTTGGACACAAACATTAATTGGTCGTGTATTAGCAGACGATATATACAGAGGTTCACGATGCATTGCCATTAGAAATCAAGATATTGGAATTGGACTTTTCAATCGATTGAAAACCTTTCAAACACAACCAATATCTATACGAACTCCTTTTACCTGTAGGAATACATCTTGGATCTGTCGATTGTGTTATGGCCAAAGTCCTACTCAAGGTCACTTGGTGGAATTAGGAGAAGCTGTAGGTATTATTGCGGGCCAATCCATTGGAGAACCGGGCACTCAATTAACATTAAGAACTTTTCATACTGGCGGAGTATTCACAGGGGGTACTGCAGAACAGGGTATATATAACATAACTTCACAGCCAAAAAACTCATTTCCAGTAGAAAGAGCTTTGAGCAGAAACATGGGAGAAGTAGCTGAAGCTCAATACTTCAGATCAGAAATAGCTCTTCTGAATTACTCAGATGCCAGTTTGAAACCCCCACTATCTCCTCTCTTGATCCACATTGATCCACTCACACCAAGTGATTCATCTTCCTCAGAAGCTCATCCATCACCCTCTTCCCAGCTCCACCAACAGGAACAACACCCCAAAGACGCCTGGCTTCCCATCACCGAATCAAGAAATGGAAATGCCTTTTCTGCAGCCTTTCATGTTCTTAACTCCAATATCGGCTTCCAGGCTCTCATGCTTCCCGTTGCTTTCGCCACTCTTGGTTGGGTGTGGGGAACAGTATGTTTGACGGTGGCATTCATTTGGCAGCTCTACAGCATATTCCTTCTTGTTGAACTTCACGAATCCGTCCCTGGGATTCGTCACAGCAGATATCTCTTCCTCGCCATGGCTGCATTCGGTAAAAGGTTAGGGAAAGTTGCAGCATTATTCCCAGTGATGTATCTTTCAGGAGGCACATGCGTCATGCTTATCATCACCGGCGGTGGGACCCTGCAACTGTTATTCAAGACACTTTGCGAGAATGATGATGGAAACACTTGCAGTGCCTACGCGCTTACCGGGGCAGAGTGGTTCTTGGTCTTTACCTGTGCCGCCATTCTCGTTGCACAGTTGCCAAACCTCAACTCCATGGCCATGGTTTCTCTCGTCGGAGCCGTTGCCGCCATCTCTTATTGCACCCTCTTCTGGGTTCTCTCCGTTAAGAAGGGTAGGCCCAACAACGTATCGTATACCTCAACCCTGTCGCAAGAATCCACTGCGGTGGCTAAGATCAACGACGTTCTCAATGCTATTGGAATCATCGTTCTAGCCTACAGAGGTCATAATGTTTTGCTCGAGATACAGGCAAGGGACGCTGCCTTCAGATTTCGAAAGAACATCCAAAGAACCAATGCGCAGAGGAGTGAGCATGTCGTATGTTCTGATCTCCATGTGCGTCTTTCCTCTTGCAATTGCCGGATTCTGGGCCTATGGAAGCCAGGCAAGACTACCAGAAAACCGACCAATATTCCCAGATTACGCAGCTACCAAATCTATGCGATGCCGGTTTTCGACAACCTTGAGATAAGATTGACGAGCATAACGAATGAGAGATGTTCGGGATTGGCGAGAACATGCATAAGATTATTTTTCGGGGGATTGACGTTTTTCATAGCTGTCACATTCCCATTCCTTCCATCCCTATCAGCACTGCTTGGAAGCATGACCCTGGTGCCAATCACGTATGCATACCCCTGTTTCATGTTTCTATCACTGAAGAAGCCTCGACCAAGAGGTTTTGTTTGGTGCTTCAACGCTGCGCTCGGGTGCTTAGGGTTGCTTCTCAGCGCTCTTCTCTTAGCTGCAGCTGCAAGGACTCTGTCTCACAGAGGCTTGAATGCTAACTTTTTCAGACCATAA 2571 0.4422 MAERTNLMFHNKVIGGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFRQATATSISLGIDDLLTIPSKGWLVRDAEHQNLILEKQHHYGNVHAVEKLRQSIEIWYATSEYFRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVIRRTDCGTIRGISVNTQNEMMPERSWTQTLIGRVLADDIYRGSRCIAIRNQDIGIGLFNRLKTFQTQPISIRTPFTCRNTSWICRLCYGQSPTQGHLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEQGIYNITSQPKNSFPVERALSRNMGEVAEAQYFRSEIALLNYSDASLKPPLSPLLIHIDPLTPSDSSSSEAHPSPSSQLHQQEQHPKDAWLPITESRNGNAFSAAFHVLNSNIGFQALMLPVAFATLGWVWGTVCLTVAFIWQLYSIFLLVELHESVPGIRHSRYLFLAMAAFGKRLGKVAALFPVMYLSGGTCVMLIITGGGTLQLLFKTLCENDDGNTCSAYALTGAEWFLVFTCAAILVAQLPNLNSMAMVSLVGAVAAISYCTLFWVLSVKKGRPNNVSYTSTLSQESTAVAKINDVLNAIGIIVLAYRGHNVLLEIQARDAAFRFRKNIQRTNAQRSEHVVCSDLHVRLSSCNCRILGLWKPGKTTRKPTNIPRLRSYQIYAMPVFDNLEIRLTSITNERCSGLARTCIRLFFGGLTFFIAVTFPFLPSLSALLGSMTLVPITYAYPCFMFLSLKKPRPRGFVWCFNAALGCLGLLLSALLLAAAARTLSHRGLNANFFRP 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02588 856 PANTHER DNA-DIRECTED RNA POLYMERASE 11 349 IPR045867 GO:0003899|GO:0006351
Vimu5g02588 856 MobiDBLite consensus disorder prediction 413 434 - -
Vimu5g02588 856 Gene3D RNA polymerase Rpb1, domain 3 1 58 IPR042102 -
Vimu5g02588 856 Gene3D - 59 196 IPR038120 -
Vimu5g02588 856 Pfam Transmembrane amino acid transporter protein 448 673 IPR013057 -
Vimu5g02588 856 Pfam Transmembrane amino acid transporter protein 731 839 IPR013057 -
Vimu5g02588 856 MobiDBLite consensus disorder prediction 413 437 - -
Vimu5g02588 856 Pfam RNA polymerase Rpb1, domain 5 172 357 IPR007081 GO:0003677|GO:0003899|GO:0006351
Vimu5g02588 856 FunFam DNA-directed RNA polymerase subunit beta'' 59 196 - -
Vimu5g02588 856 Pfam RNA polymerase Rpb1, domain 4 96 157 IPR007083 GO:0003677|GO:0003899|GO:0006351
Vimu5g02588 856 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 9 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02588 Vimu-Chr5 36097883 36103438 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02588 430 856 Organic Solute Cotransporters AT1G47670 44.812 1.21e-114 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02588 K03046 - gmx:3989293 669.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02588 5 36097883 36103438 Vimu5g02588 5 36097883 36103438 ECH