Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02581 ATGGAGACAGATAGTGGGAGGCTGAGCAGGAAGAAAAGTGGTGGAAACGGACAGGTTCTAGACGGTTCCAATATTATGGAGTTGGTTGGAAACGACCAGGTTTTCACCACCTTCGTCGACAATAAGTTCCACCAGTTAGACACAGACAGAGATGGCAAACTCTCTGTGAAAGAGCTCCAACCTGCTGTTGCTGACATAGGTGCTGCTCTCGGCCTCCCTCCTCACGGCACCAATCCTGATTCTGATCACATCTATTCCGAGGTGTTGAATGAATTCACTCATGGGAAGCAGGAAAAAGTGAGCAAAACTGAATTCAAAGAGGTTCTCTCTGATATTCTCTTGGGTATGGCTGCTGGACTGAAGCGTGACCCAATTGTGATACTTCGCATTGATGGAGAAGATCTTCTGGAATTTGTTAATGGTTCGGCTTATGAAGCAGAAATGGCGTCTATATTTTCTCATATTGAATCCCCTAACAGATCACTGCACGACCATATAATTGAAGCTCTTGGCAAGCTCACTGTGGAACAAGGAATTCCTCCTACAGCAGATTCTTGGGTTTTAAGCAACATTGTAGAACCGGCACTGCTATCTCTAGATAGATCTGGTTTGGACAAGCCTGTTGTTTCTCAGGAGACATTTTTGGAGGAATTTAAGGTAGTGGCATTGGCTGTGGCTAATCGTCTTAAGGAGCAACCAGTCATAGTTGCTCACAGTGAGAACATCTTTGATGGAAGTGGTGTTAAGAGACTACTATCCAATAAGTTCGAATTGGACAAGACTTTGAACTCAGCTTTAGAGACTTTGCCTAAAGACCGAAATGGAAAGATGTCAAAAGAGTATCTACGGGTGGCACTGGACGCGCTGGCTCCATCTGCTGGTTTACCTCCCCTCGGTGCCATTGAAGAGATGGATAAGGTTATTGGTGTAGTGTTTAAGTTGGTGAATGCAGATGAAGCGAAGATGGTGAAAGAAGAGGAGTTCAAGAAAGTTTTAACTGAGATACTAGGGAGCATTATGTTGCAGTTGGAGGGAAGCCCCATATCGGTTTCTTCAAATTCTGTAGTGCACGAGCCTCTAGACTCATCTTCTACACTTCTTCAGCCATCCTCTAGTGAAACTGCACCCTAG 1131 0.4483 METDSGRLSRKKSGGNGQVLDGSNIMELVGNDQVFTTFVDNKFHQLDTDRDGKLSVKELQPAVADIGAALGLPPHGTNPDSDHIYSEVLNEFTHGKQEKVSKTEFKEVLSDILLGMAAGLKRDPIVILRIDGEDLLEFVNGSAYEAEMASIFSHIESPNRSLHDHIIEALGKLTVEQGIPPTADSWVLSNIVEPALLSLDRSGLDKPVVSQETFLEEFKVVALAVANRLKEQPVIVAHSENIFDGSGVKRLLSNKFELDKTLNSALETLPKDRNGKMSKEYLRVALDALAPSAGLPPLGAIEEMDKVIGVVFKLVNADEAKMVKEEEFKKVLTEILGSIMLQLEGSPISVSSNSVVHEPLDSSSTLLQPSSSETAP 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02581 376 ProSiteProfiles EF-hand calcium-binding domain profile. 34 69 IPR002048 GO:0005509
Vimu5g02581 376 Pfam EF-hand domain pair 42 108 IPR002048 GO:0005509
Vimu5g02581 376 SMART efh_1 38 66 IPR002048 GO:0005509
Vimu5g02581 376 SMART efh_1 307 335 IPR002048 GO:0005509
Vimu5g02581 376 SMART efh_1 261 289 IPR002048 GO:0005509
Vimu5g02581 376 MobiDBLite consensus disorder prediction 1 22 - -
Vimu5g02581 376 Gene3D - 37 337 - -
Vimu5g02581 376 PANTHER CALCIUM-BINDING EF-HAND FAMILY PROTEIN-RELATED 130 355 - -
Vimu5g02581 376 ProSitePatterns EF-hand calcium-binding domain. 47 59 IPR018247 -
Vimu5g02581 376 SUPERFAMILY EF-hand 42 344 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02581 Vimu-Chr5 36069800 36072789 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02581 18 374 EF-hand Containing Proteins AT4G38810 68.802 1.01e-172 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02581 - - gmx:100820516 643.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02581 5 36069800 36072789 Vimu5g02581 5 36069800 36072789 ECH