Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02577 ATGGGAGAAGAAGGTATTTGGAAAGATGTTACAAAGCAAGGGATCAACCCCGGAAAGGCTACTATATTAGCTCTTGGCAAGGCTTTCCCTCCTCAGCTTGTCATGCAAGAGTTTTTGGTTGATGGATATTTCAGGAACACAAACTGTGACAATCCTGAGCTTAAGCAGAAGCTCACTAGACTTTGTGATTTGTTCACTCTTCATTTCCACCACCTGTTACCCTTCAAACAGTTGATTCTCGCCTTGAAAGTTGGCAAAACAACTACAGTGAAAACAAGGTACGTGGTTATGTCGGAGGAAATACTGATGAAGTATCCAGAACTTGTTTCTGAAGGGATCCCTACAGTGAAGCAGCGGCTAGAGATATGTAACGAGGCAGTGACAGAAATGGCCATTGAGGCTTCACAAGCTTGCATGAAGAACTGGGGTGGATCATTATCAGACATAACACACTTGGTTTATGTCTCATCAAGTGAAGCAAGACTACCTGGTGGTGACCTTTACCTGGCGAAAGGATTAGGACTGAGCCCTGATACTCAACGAATCATGCTCTATTTCGCTGGTTGTTCAGGTGGTGTGGCTGGCCTGCGTGTTGCGAAAGACATAGCTGAGAACAACCCTGGAAGTAGGGTGCTGCTTGCTACCTCAGAAACTACAATTATAGGGTTCAAGCCACCAAGTGCAGATAGACCCTATGATCTTGTGGGGGTGGCACTCTTTGGGGATGGTGCTGCTGCCATGATAATTGGTTCAGACCCAATATTGGAGTATGAGAAGCCTCTCTTTGAGCTTCACACTGCAGTTCAGGAGTTTTTGCCACATACTGAGAAGAAAATTGATGGGAGGCTGACAGAAGAGGGGATAAGCTTCAAGCTAGCAAGGGAACTTCCTCAGATAATTGAAGACTCTGTTGAAGGATTCTGTGACAAATTAATGAGTGTTGTTGGGTTCCAGAATAAGGAGTACAACAAGCTATTCTGGGCTGTCCATCCAGGGGGACCAGCCATCTTAAATCGCATTGAGAAAAGACTTGATTTGTTACCAGAGAAGCTAAGTGCAAGTAGAAGGGCTCTCATGGACTATGGCAATGCTAGCAGTAATACCATTGTGTATGTGCTGGAGTATATGATAGAGGAGGGTCTCAAGACTAGAAAAGATGGTAGAGGAGATCATGAATGGGGTTTGATACTTGCATTTGGACCTGGAATTACATTCGAGGGAATTCTTGCCAGGAACTTGTGTGCTTTAAATGTCACATAA 1260 0.4452 MGEEGIWKDVTKQGINPGKATILALGKAFPPQLVMQEFLVDGYFRNTNCDNPELKQKLTRLCDLFTLHFHHLLPFKQLILALKVGKTTTVKTRYVVMSEEILMKYPELVSEGIPTVKQRLEICNEAVTEMAIEASQACMKNWGGSLSDITHLVYVSSSEARLPGGDLYLAKGLGLSPDTQRIMLYFAGCSGGVAGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSADRPYDLVGVALFGDGAAAMIIGSDPILEYEKPLFELHTAVQEFLPHTEKKIDGRLTEEGISFKLARELPQIIEDSVEGFCDKLMSVVGFQNKEYNKLFWAVHPGGPAILNRIEKRLDLLPEKLSASRRALMDYGNASSNTIVYVLEYMIEEGLKTRKDGRGDHEWGLILAFGPGITFEGILARNLCALNVT 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02577 419 SUPERFAMILY Thiolase-like 16 256 IPR016039 GO:0016746
Vimu5g02577 419 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 12 413 IPR011141 GO:0009058|GO:0016747
Vimu5g02577 419 SUPERFAMILY Thiolase-like 260 411 IPR016039 GO:0016746
Vimu5g02577 419 FunFam Chalcone synthase 1 261 414 - -
Vimu5g02577 419 Pfam Chalcone and stilbene synthases, N-terminal domain 9 71 IPR001099 -
Vimu5g02577 419 Pfam Chalcone and stilbene synthases, N-terminal domain 83 253 IPR001099 -
Vimu5g02577 419 PIRSF PKS_III 7 73 IPR011141 GO:0009058|GO:0016747
Vimu5g02577 419 PIRSF PKS_III 66 414 IPR011141 GO:0009058|GO:0016747
Vimu5g02577 419 Gene3D - 5 260 IPR016039 GO:0016746
Vimu5g02577 419 Gene3D - 261 412 IPR016039 GO:0016746
Vimu5g02577 419 FunFam Chalcone synthase 2 74 260 - -
Vimu5g02577 419 Pfam Chalcone and stilbene synthases, C-terminal domain 263 413 IPR012328 -
Vimu5g02577 419 CDD CHS_like 20 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02577 Vimu-Chr5 36061418 36062974 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02577 109 400 Miscellaneous Gene Families AT4G34250 25.387 2.72e-15 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02577 - - vun:114168705 761.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02577 5 36061418 36062974 Vimu5g02577 5 36061418 36062974 ECH