Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02576 ATGAGACCTCAGAGAACGTCGATCTACGCCGTCACGTCATGGGTGAGGCGACAACCCCCAAAGGTAAAGGCTTTTCTCGCCGTCGTTTCCGGTATGGCGGCTCTCGTCCTCCTCCGCTTCATCGTCCACGATCACGACAATCTCTTTGTTGCTGCTGAGGCTGTCCACTCTCTGGGAATTTCTGTCCTCATCTATAAGCTCACGAAGGAGAAGACTTGTGCTGGGTTATCGCTCAAATCCCAGGAATTAACAGCTATATTTTTAGCTGTTAGGCTTTACTGCAGTTTTGTCATGGAATATGATATCCACACCATACTTGATTTCGCTACTTTCATAACAACACTGTGGGTTATATATATGATTCGTTTCAAGCTGAAGGCTAGTTACATGGAGGAGAAGGATAACTTTGCAATATACTATGTGGTGGTCCCCTGTGCTGTGTTAGCATTGCTTATTCATCCATCAACTTCTCATCATTTAATAAACAGGATTTCCTGGGCATTCTGCGTATATCTGGAAGCTGTCTCAGTCCTGCCCCAGCTGCGGGTCATGCAGAACACCAAGATTGTTGAGCCATTCACAGCCCATTACGTATTTGCACTGGGTGTCGCAAGATTCTTGAGCTGTGCACATTGGGTTCTTCAGGTATTAGATAGCCGTGGGCATTTGTTGGTAGCCTTGGGGTATGGTTTATGGCCATCAATGGTTCTTATCTCAGAAATTGTCCAGACCTTCATCCTGGCAGATTTCTGTTACTATTATGTCAAAAGTGTTTTCGGGGGACAGCTTGTTCTACGTCTTCCCTCTGGAGTGGTGTGA 819 0.4603 MRPQRTSIYAVTSWVRRQPPKVKAFLAVVSGMAALVLLRFIVHDHDNLFVAAEAVHSLGISVLIYKLTKEKTCAGLSLKSQELTAIFLAVRLYCSFVMEYDIHTILDFATFITTLWVIYMIRFKLKASYMEEKDNFAIYYVVVPCAVLALLIHPSTSHHLINRISWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAHWVLQVLDSRGHLLVALGYGLWPSMVLISEIVQTFILADFCYYYVKSVFGGQLVLRLPSGVV 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02576 272 PANTHER ER LUMEN PROTEIN RETAINING RECEPTOR 47 270 IPR000133 GO:0006621|GO:0016020|GO:0046923
Vimu5g02576 272 Pfam ER lumen protein retaining receptor 72 214 IPR000133 GO:0006621|GO:0016020|GO:0046923
Vimu5g02576 272 PRINTS ER lumen protein retaining receptor signature 75 95 IPR000133 GO:0006621|GO:0016020|GO:0046923
Vimu5g02576 272 PRINTS ER lumen protein retaining receptor signature 166 186 IPR000133 GO:0006621|GO:0016020|GO:0046923
Vimu5g02576 272 PRINTS ER lumen protein retaining receptor signature 188 202 IPR000133 GO:0006621|GO:0016020|GO:0046923
Vimu5g02576 272 PRINTS ER lumen protein retaining receptor signature 202 220 IPR000133 GO:0006621|GO:0016020|GO:0046923
Vimu5g02576 272 PRINTS ER lumen protein retaining receptor signature 48 67 IPR000133 GO:0006621|GO:0016020|GO:0046923
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02576 Vimu-Chr5 36057534 36060096 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02576 5 272 Miscellaneous Gene Families AT2G21190 87.687 5.49e-179 491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02576 - - gmx:100803652 533.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02576 5 36057534 36060096 Vimu5g02576 5 36057534 36060096 ECH