Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02566 ATGAAGCTCCGAGTTGTTGGCGCGGCGCACCCCGTCGCAGCCACCACCACCCCTTTTCTCCACAGACTCTTTTCCGCGTCCAAATTAGACGACGAAAACGATGGTCGTTTTGTGAAACTCCTTTGCGACATCGTTCGAGGAAAGCAGAGTTGGAAGGTGGCTCTGAACGATGCTTCAATTTCATCGGCATTGAGGCCCCATCACGTGGAACAAGTCTTGATCAACACCTTGGACGATTCCAGGTTAGCTTTGAGGTTCTTCAACTTTATGGGTCTGCACAAAAACATGAACCACTCCACAGCCTCCTTCGCCATCTTGGTCCACGCACTTGTTCACTCCAGACTCTTCTGGCCCGCTAATTCCCTCTTGCAAACCCTTCTCCTTCGTGGGTCCCACCCCAACTACGTTTTTCAACACTTTCTACACTCTTACAAGCTATGTAACCTTTCGTCCACTTTGGGTTTCGATCTGCTGGTTCAGAGTTACGTGTTAAGTTCACGAGTTTTTGATGCTATTGTCGTGGTGAAACTCATGCTTGCCAATGCTTTGTTGCCTGAGGTTAGAACCTTGAGTTCCCTCTTGAACGGGCTTTTGAGAGTTAGAAAATTTATAACGGTTTGCGAATTGTTTGATGAGTCTGTGAATGCGGGTGTTCGACCTGATCCTTATACTTGTTCCGCTGTGATTCGGAGTCTCTGTGAATTGAAAGATTTTTTTAGAGCTAAGGAGAAGATTCTGTGGATGGAATCTAATGGGTTTGATTTGAGTATTGTAACTTACAATGTCTTGATTCATGGGCTGTGCAAGGGCGATAGAGTTGGGGAAGCTGTTGAGGTTAAAAGATCGTTGAAGGCGAAGGGTTTGAAAGCTGATGTTATTACATACTGTACACTAGTGCTTGGTTTTTGTAGGGTGCAACAATTTGAGGCTGGAATTCAGCTTATGGATGATATGGTTCAATTGGGGCTTGCTCCATCCGAAGCTGCTGTGTCGGGTCTAGTAGATGGATTGAGAAAGCAGGGAAAGATTGAGGATGCTTATGAGTTGGTAGTTAAGGTAGGGAGGTCTGGTTTTGTGCCGAATTTGTTTGTTTATAATGCATTGATCAATTCTCTGTGCAAAGGTGGAGATTTCGATAAGGCAGAGTTGCTTTATAATAATATGAGTTTGATGAACTTGCATCCCAATGGTATCACTTATTCCATTCTTATTGATTCCTTCTGCAGAAAGGGGAGGTTGGATGTTGCAAGATCTTATTTTGATAGAATGATAAAAGATGGTATACGAGAAACTGTATATGCCTACAACTCTTTGATAAATGGCGAATGCAAGTTTGGGGATTTGACTGCAGCCCAGTCTCTGTTTATTGAGATGATCAATAAAGGGGTGGAGCCAACTGCTACAACTTTTACTTCATTGATTAGTGGTTATTGCAGAAACCTACAAATACCAAAAGCATTTGAGTTATATAATGAGATGATCGAGAAAGGAATTACTCCAAACATTTATACTCTCACAGCACTTATTTCTGGGCTTTGCAGCACAAATAAGATGGCTGAAGCATCCAAACTATTTTATGATTTGTTTGAAAGGAAAATCAAGCCAACTGAGGTGACATATAATGTGTTGATTGAAGGGTATTGTAGGGATAACAACATTGATAAAGCCTTTGAATTGTTTGAAGACATGCTTCAAAAGGGCCTTGTTCCTGACACATATACCTATAGACCTCTTATCAGTGGCCTTTGCTCAACTGGTAGGGTTTCTGAAGCTAGAGATTTTATTGATGTTCTCCACAAGCAGAAAGTAAAGTTAAATGAGATGTGCTATAGTGCACTTCTACATGGTTATTGCCAGGAAGGAAGACTGATGGAGGCACTGAGTGCTTCTTGTGAAATGATTCAAAGAGGAATCAACATGGATCTGGTTTGCCATGCTGTTCTTATTGACGGTGCTCTAAAGCAGCCAGACAGGAGAACGTTTTTTGATCTCTTAAAAAATATGCACGATCAAGGATTGAGACCTGATAATGTAATATATACAAGTATGATAGATGCATACAGCAAAGAAGGATCTCTGAAGAAAGCTTTTGAATGCTGGGATTTGATGGTTACTGAGGAATGCTTTCCTAATGTCGTGACTTATACTGCTTTGATGAATGGTTTATGCAAAGCAGGAGAAATGGACAGAGCAGGTATTCTTTTTAAAAAGATGCTGGCTGCAAATGTCCCTCCCAATTCAATCACGTATGGCTGTTTTCTTGACAATCTTACGAAGGAAGGATATATGAAGGAAGCTATAGGCCTTCACCATGCAATGCTTAGAGGGCTTTTAGCTAACACTGTAACATATAACATTATTATCCGGGGCTTCTGCAGACTGGGTAGATTTCATGAAGCCACTGAAGTCCTTTCCGAAATGACTGGAAATGGTATTTTCCCTGACTGTGTTACCTATTCAACATTAATTTATGAGTATTGCAGAAATGGCAATGTAGGGGCAGCTGTTAAATTATGGGATACCATGTTAAAGAAAGGTCTCAAACCAGATTTGGTTGCATACAACTTGCTAATATATGGCTGTTGTGTTAATGGAGAGCTTGACAAGGCATTTGAATTGCATGATGATATGTTGAAGAGAGGGATGAAGCCAAGACAAAGTTTACGAGAATTGCAGAAGGGTGAATATAAGAGCCCCAGCTAA 2703 0.4132 MKLRVVGAAHPVAATTTPFLHRLFSASKLDDENDGRFVKLLCDIVRGKQSWKVALNDASISSALRPHHVEQVLINTLDDSRLALRFFNFMGLHKNMNHSTASFAILVHALVHSRLFWPANSLLQTLLLRGSHPNYVFQHFLHSYKLCNLSSTLGFDLLVQSYVLSSRVFDAIVVVKLMLANALLPEVRTLSSLLNGLLRVRKFITVCELFDESVNAGVRPDPYTCSAVIRSLCELKDFFRAKEKILWMESNGFDLSIVTYNVLIHGLCKGDRVGEAVEVKRSLKAKGLKADVITYCTLVLGFCRVQQFEAGIQLMDDMVQLGLAPSEAAVSGLVDGLRKQGKIEDAYELVVKVGRSGFVPNLFVYNALINSLCKGGDFDKAELLYNNMSLMNLHPNGITYSILIDSFCRKGRLDVARSYFDRMIKDGIRETVYAYNSLINGECKFGDLTAAQSLFIEMINKGVEPTATTFTSLISGYCRNLQIPKAFELYNEMIEKGITPNIYTLTALISGLCSTNKMAEASKLFYDLFERKIKPTEVTYNVLIEGYCRDNNIDKAFELFEDMLQKGLVPDTYTYRPLISGLCSTGRVSEARDFIDVLHKQKVKLNEMCYSALLHGYCQEGRLMEALSASCEMIQRGINMDLVCHAVLIDGALKQPDRRTFFDLLKNMHDQGLRPDNVIYTSMIDAYSKEGSLKKAFECWDLMVTEECFPNVVTYTALMNGLCKAGEMDRAGILFKKMLAANVPPNSITYGCFLDNLTKEGYMKEAIGLHHAMLRGLLANTVTYNIIIRGFCRLGRFHEATEVLSEMTGNGIFPDCVTYSTLIYEYCRNGNVGAAVKLWDTMLKKGLKPDLVAYNLLIYGCCVNGELDKAFELHDDMLKRGMKPRQSLRELQKGEYKSPS 900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02566 900 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 780 814 IPR002885 -
Vimu5g02566 900 Pfam PPR repeat 748 775 IPR002885 -
Vimu5g02566 900 Pfam PPR repeat 434 463 IPR002885 -
Vimu5g02566 900 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 291 325 IPR002885 -
Vimu5g02566 900 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 850 884 IPR002885 -
Vimu5g02566 900 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 326 360 IPR002885 -
Vimu5g02566 900 Gene3D Tetratricopeptide repeat domain 68 243 IPR011990 GO:0005515
Vimu5g02566 900 Gene3D Tetratricopeptide repeat domain 518 659 IPR011990 GO:0005515
Vimu5g02566 900 SUPERFAMILY HCP-like 301 495 - -
Vimu5g02566 900 NCBIfam pentatricopeptide repeat 609 641 IPR002885 -
Vimu5g02566 900 NCBIfam pentatricopeptide repeat 364 396 IPR002885 -
Vimu5g02566 900 NCBIfam pentatricopeptide repeat 538 572 IPR002885 -
Vimu5g02566 900 NCBIfam pentatricopeptide repeat 469 502 IPR002885 -
Vimu5g02566 900 NCBIfam pentatricopeptide repeat 817 850 IPR002885 -
Vimu5g02566 900 NCBIfam pentatricopeptide repeat 503 537 IPR002885 -
Vimu5g02566 900 NCBIfam pentatricopeptide repeat 573 607 IPR002885 -
Vimu5g02566 900 NCBIfam pentatricopeptide repeat 293 326 IPR002885 -
Vimu5g02566 900 NCBIfam pentatricopeptide repeat 433 466 IPR002885 -
Vimu5g02566 900 NCBIfam pentatricopeptide repeat 678 712 IPR002885 -
Vimu5g02566 900 NCBIfam pentatricopeptide repeat 398 428 IPR002885 -
Vimu5g02566 900 NCBIfam pentatricopeptide repeat 852 884 IPR002885 -
Vimu5g02566 900 NCBIfam pentatricopeptide repeat 713 746 IPR002885 -
Vimu5g02566 900 NCBIfam pentatricopeptide repeat 782 816 IPR002885 -
Vimu5g02566 900 NCBIfam pentatricopeptide repeat 258 291 IPR002885 -
Vimu5g02566 900 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 536 570 IPR002885 -
Vimu5g02566 900 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 431 465 IPR002885 -
Vimu5g02566 900 SUPERFAMILY HCP-like 483 768 - -
Vimu5g02566 900 Pfam PPR repeat family 256 304 IPR002885 -
Vimu5g02566 900 Pfam PPR repeat family 360 409 IPR002885 -
Vimu5g02566 900 Pfam PPR repeat family 535 584 IPR002885 -
Vimu5g02566 900 Pfam PPR repeat family 780 828 IPR002885 -
Vimu5g02566 900 Pfam PPR repeat family 675 724 IPR002885 -
Vimu5g02566 900 Pfam PPR repeat family 469 514 IPR002885 -
Vimu5g02566 900 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 361 395 IPR002885 -
Vimu5g02566 900 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 815 849 IPR002885 -
Vimu5g02566 900 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 711 745 IPR002885 -
Vimu5g02566 900 Gene3D Tetratricopeptide repeat domain 354 428 IPR011990 GO:0005515
Vimu5g02566 900 Gene3D Tetratricopeptide repeat domain 244 353 IPR011990 GO:0005515
Vimu5g02566 900 Gene3D Tetratricopeptide repeat domain 738 898 IPR011990 GO:0005515
Vimu5g02566 900 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 256 290 IPR002885 -
Vimu5g02566 900 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 606 640 IPR002885 -
Vimu5g02566 900 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 466 500 IPR002885 -
Vimu5g02566 900 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 378 590 - -
Vimu5g02566 900 Gene3D Tetratricopeptide repeat domain 429 517 IPR011990 GO:0005515
Vimu5g02566 900 Pfam PPR repeat 603 633 IPR002885 -
Vimu5g02566 900 Pfam PPR repeat 845 877 IPR002885 -
Vimu5g02566 900 Gene3D Tetratricopeptide repeat domain 660 737 IPR011990 GO:0005515
Vimu5g02566 900 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 571 605 IPR002885 -
Vimu5g02566 900 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 396 430 IPR002885 -
Vimu5g02566 900 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 501 535 IPR002885 -
Vimu5g02566 900 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 186 220 IPR002885 -
Vimu5g02566 900 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 676 710 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02566 403 898 Glycosyltransferase AT1G05670 30.297 1.68e-72 252
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02566 - - gmx:100797093 1583.16