Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02562 CACCTCTCCGCCAAACCCTCCCTCCAATTCCCCAACATCTTCCACCGCGCCACCACCGCCACGCGCCGGGCACGCGTCGTCGTCTCTGCCGTCGAAGCGCCGGAGAAAATCACGACTCTCGGCGACGCAATCGCCGGACTCACCCTGGAGGAGGCGAAGACTCTCGTAGACTTCCTCCAGGACAAGCTCGGGGTCTCCGCAGCGTCCTTCGCTCCCGTGGCTGCCGTCGCGGCTCCCGGAGGCGCCGCTGCGGATGCGGCGCCGGTGGTGGAAGAGAAGACGGAGTTCGACGTCGTGATCGAGGAGGTGCCGAGCAATGCGAGAATCGCCGTGATTAAGGCCGTGAGAGCGTTGACGAGCCTGGCGCTGAAGGAGGCGAAAGAGTTGATCGAAGGATTGCCGAAGAAGTTCAAGGAAGGGATTTCAAAGGAAGAAGCGGAAGATGCGAAGAAGCAACTCGAAGAAGCTGGTGCCAAGATTGCCATTGTTTAG 492 0.6138 HLSAKPSLQFPNIFHRATTATRRARVVVSAVEAPEKITTLGDAIAGLTLEEAKTLVDFLQDKLGVSAASFAPVAAVAAPGGAAADAAPVVEEKTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQLEEAGAKIAIV 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02562 163 SUPERFAMILY ClpS-like 91 162 IPR014719 -
Vimu5g02562 163 Hamap 50S ribosomal protein L7/L12 [rplL]. 30 163 IPR000206 GO:0003735|GO:0005840|GO:0006412
Vimu5g02562 163 Pfam Ribosomal protein L7/L12 dimerisation domain 36 85 IPR008932 GO:0003735|GO:0005840|GO:0006412
Vimu5g02562 163 CDD Ribosomal_L7_L12 35 162 IPR000206 GO:0003735|GO:0005840|GO:0006412
Vimu5g02562 163 Gene3D Single helix bin 36 91 IPR036235 GO:0003735|GO:0005840|GO:0006412
Vimu5g02562 163 PANTHER 39S RIBOSOMAL PROTEIN L12 15 162 IPR000206 GO:0003735|GO:0005840|GO:0006412
Vimu5g02562 163 Pfam Ribosomal protein L7/L12 C-terminal domain 96 162 IPR013823 GO:0003735|GO:0006412
Vimu5g02562 163 Gene3D - 92 162 IPR014719 -
Vimu5g02562 163 FunFam 50S ribosomal protein L7/L12 92 163 - -
Vimu5g02562 163 SUPERFAMILY Ribosomal protein L7/12, oligomerisation (N-terminal) domain 36 98 IPR036235 GO:0003735|GO:0005840|GO:0006412
Vimu5g02562 163 NCBIfam 50S ribosomal protein L7/L12 38 162 IPR000206 GO:0003735|GO:0005840|GO:0006412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02562 K02935 - gmx:100779891 216.468