Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02557 ATGGCTTTGTCTTCACTTATTTCCAATATTCTTCTTCTCCTCCTTTTCTCTTTCACCAAAGAAGCTTTATCTGTGTCAAAGCTTTCAGTAACTGATAATGATAATTACGTTAGCCGGGAAATACTGGCAGAACAAGAAGCTGATAGAGTTTACGGATTACCAGGGCAACCACCAGTGAAATTCAAACAATATGCAGGCTATATCACTGTCAATGAAACTCATGGAAGAGCACTGTTTTATTGGTTCTTTGAAGCCACTCACAAACCAGAAGAAAAACCAGTCTTATTGTGGCTCAATGGAGGCCCAGGTTGTTCCTCAATCGGTTATGGAGAAGCAGAGGAATTAGGACCCTTCTTTCCCCAGGACAGTAGCCAGCCAAAGCTAAAGTTGAACCCTTATTCATGGAACAATGCTGTCAATCTTCTGTTTTTGGAAAGCCCTGTCGGAGTGGGATTTTCCTACACCAACACCAGCAGTGACATAATTGAGCTTGGTGACACCATTACTGCTAAAGATTCACACATCTTTGTCATCAAGTGGTTTAGGAGGTTCCCACAATTCAGATCACACAAGTTCTACATTGCCGGTGAAAGCTATGCAGGGCATTATGTTCCACAACTTTCCGAGCTTATCTTCGATAACAATCTCAACCACGCTGAAAAAGACTACATTAACTTCAAAGGTTTTCTGATTGGAAATGCATTATTGGACGACGAAACAGATCAAAAGGGTATGATAGATTATGCATGGGATCATGCAGTGATATCGGATGCACTATACCACAACATCACAGCCATATGCGATTTCAATCATCCAATTCAAAACCAGACAAACGAATGCAACACGGAACTGAATAAGTACTTCGATGTGTATAAGATTATTGACATGTATAGCTTGTACACTCCCAGGTGTTTCAGCAACCTCAGCAGCACCTCCACAAACGAAGCCTCTCAAACTTCTTCCAAAATTAATAGGTGGCAAAGAAAACGAGCTGGATATGATCCCTGTGCATCCGATTACACTGAAGTTTACCTGAACATACCAGAAGTCCAAAAAGCATTGCATGCCAATGTCACAAAAATTCCCTATCCATGGACTCACTGCAGTGATAACATCACATTTTGGGATGACTCGCCACAGTCCATTCTTCCTGTCCTCAAGAAGCTTGTTGCTGGTGGTCTTCGCATCTGGGTTTACAGTGGAGACACTGATGGAAGAATTCCAGTAACAGCAACAAGATACACACTGAGAAAGCTGGGACTTGGAATTGTAGAGGATTGGAGTCCATGGTATACTAGCCGTCAGGTGGGAGGATGGAGCATAGTGTATGATGGACTTACTTTTGTTACCATAAGAGGTGCTGGCCATCAAGTTCCAACTTTCACTCCCAAGCAAGCTCTGCAATTACTTCGACACTTTATAGATAATAAGAAATTACCATCTCGACCAATTTAA 1455 0.4192 MALSSLISNILLLLLFSFTKEALSVSKLSVTDNDNYVSREILAEQEADRVYGLPGQPPVKFKQYAGYITVNETHGRALFYWFFEATHKPEEKPVLLWLNGGPGCSSIGYGEAEELGPFFPQDSSQPKLKLNPYSWNNAVNLLFLESPVGVGFSYTNTSSDIIELGDTITAKDSHIFVIKWFRRFPQFRSHKFYIAGESYAGHYVPQLSELIFDNNLNHAEKDYINFKGFLIGNALLDDETDQKGMIDYAWDHAVISDALYHNITAICDFNHPIQNQTNECNTELNKYFDVYKIIDMYSLYTPRCFSNLSSTSTNEASQTSSKINRWQRKRAGYDPCASDYTEVYLNIPEVQKALHANVTKIPYPWTHCSDNITFWDDSPQSILPVLKKLVAGGLRIWVYSGDTDGRIPVTATRYTLRKLGLGIVEDWSPWYTSRQVGGWSIVYDGLTFVTIRGAGHQVPTFTPKQALQLLRHFIDNKKLPSRPI 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02557 484 Gene3D alpha/beta hydrolase 44 306 IPR029058 -
Vimu5g02557 484 Gene3D - 382 475 - -
Vimu5g02557 484 PRINTS Carboxypeptidase C serine protease (S10) family signature 144 154 IPR001563 GO:0004185|GO:0006508
Vimu5g02557 484 PRINTS Carboxypeptidase C serine protease (S10) family signature 180 205 IPR001563 GO:0004185|GO:0006508
Vimu5g02557 484 PRINTS Carboxypeptidase C serine protease (S10) family signature 446 459 IPR001563 GO:0004185|GO:0006508
Vimu5g02557 484 PRINTS Carboxypeptidase C serine protease (S10) family signature 131 143 IPR001563 GO:0004185|GO:0006508
Vimu5g02557 484 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 49 463 IPR001563 GO:0004185|GO:0006508
Vimu5g02557 484 FunFam Carboxypeptidase 382 476 - -
Vimu5g02557 484 Pfam Serine carboxypeptidase 54 476 IPR001563 GO:0004185|GO:0006508
Vimu5g02557 484 Gene3D - 336 373 - -
Vimu5g02557 484 SUPERFAMILY alpha/beta-Hydrolases 45 479 IPR029058 -
Vimu5g02557 484 FunFam Carboxypeptidase 44 306 - -
Vimu5g02557 484 ProSitePatterns Serine carboxypeptidases, histidine active site. 446 463 IPR033124 GO:0004185
Vimu5g02557 484 ProSitePatterns Serine carboxypeptidases, serine active site. 194 201 IPR018202 GO:0004185
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02557 Vimu-Chr5 35958359 35963757 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02557 344 479 Calmodulin-binding Proteins AT2G22960 30.657 9.28e-16 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02557 K16297 - gmx:100797264 861.677