Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02555 ATGGAGGGAAAAGGAACAGGAACCGCCACAGGCTGTTACAAGTGCGGCAGACCAGGTCACTGGTCACGAGACTGTCCTTTCTCTGCTCCCAATTCCAATCCAAACCCTAACGCCTCCACCAAGCCCACTTCCGATCCTACTTCATCTTCTTTCAAGCCCAGATCCGCCGCCGAAAAGCCCAAGAAACTTCCCCGAACAAGGCCCAAACTAACACCGGAGATGCTTCTCTCCGACGACGGCCTCGGTTACGTCCTTCGCTATTTCCCTCGCCAGTTCAAATACCGTGGTCGCGGCCACGAGGTTCGTGACTTGGGTAATCTGCTTCAGTTGTACACTGAGTGGCACTCTCACTTGCTTCCTTATTACTCTTTCAATGAATTTATTCATAAAGTGGAGAAAGTTGCCGCTACCAGGCGTGTCAAGACTACCCTTTTAGAATTGAGAGAAAGAGTTGCAAATGGTGGAGATCCAACAAAACTGCGCGAACCACCAGTTGTGGATGACATTTCAATTGATGAACAGGGATTTGCTGGATCTGCTGAAGATGGGGGTGCAACTCGTCAAGAGACAGATGTGTTTGCAGATTCTGTGAATGTTACTGACATTCAGGAAGAAATGCTTAATGATATATATGATAGGGCTACCGAACAACCTTCTCAGTCAACGGACAATGTGATTGGCACCAGCATGGCTTCAGAAAGTAACTCAACCGAAAAGACAGCAGAGAAAGTCCAAAATAATGGAACAGGCCAGTCGGCCAAAGCCGAGATAACAGAAGAGCAGAGAGCTCGTATGGAAGCAAATAGGTTAAAGGCACTTCAAAGGCGTGCTGCTCGAGCTGCCTCATCACAGGCCCCCTAA 861 0.4866 MEGKGTGTATGCYKCGRPGHWSRDCPFSAPNSNPNPNASTKPTSDPTSSSFKPRSAAEKPKKLPRTRPKLTPEMLLSDDGLGYVLRYFPRQFKYRGRGHEVRDLGNLLQLYTEWHSHLLPYYSFNEFIHKVEKVAATRRVKTTLLELRERVANGGDPTKLREPPVVDDISIDEQGFAGSAEDGGATRQETDVFADSVNVTDIQEEMLNDIYDRATEQPSQSTDNVIGTSMASESNSTEKTAEKVQNNGTGQSAKAEITEEQRARMEANRLKALQRRAARAASSQAP 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02555 286 ProSiteProfiles Zinc finger CCHC-type profile. 12 26 IPR001878 GO:0003676|GO:0008270
Vimu5g02555 286 Pfam Replication Fork Protection Component Swi3 69 150 IPR012923 GO:0005634|GO:0006974|GO:0031297
Vimu5g02555 286 MobiDBLite consensus disorder prediction 26 54 - -
Vimu5g02555 286 Coils Coil 255 275 - -
Vimu5g02555 286 PANTHER TIMELESS INTERACTING-RELATED 5 281 IPR040038 GO:0000076
Vimu5g02555 286 SMART c2hcfinal6 11 27 IPR001878 GO:0003676|GO:0008270
Vimu5g02555 286 SUPERFAMILY Retrovirus zinc finger-like domains 7 28 IPR036875 GO:0003676|GO:0008270
Vimu5g02555 286 Pfam Zinc knuckle 11 26 IPR001878 GO:0003676|GO:0008270
Vimu5g02555 286 MobiDBLite consensus disorder prediction 24 72 - -
Vimu5g02555 286 MobiDBLite consensus disorder prediction 215 263 - -
Vimu5g02555 286 Gene3D - 8 68 - -
Vimu5g02555 286 MobiDBLite consensus disorder prediction 215 256 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02555 K10998 - gmx:100808422 410.223