Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02554 ATGGAGATAAATTTGGGGAAACTTGCATTTGACGTTGATTTTCATCCGTCAGATAACCTTGTCGCCACGGGTTTAATTAACGGGGACCTTCATCTATACCGTTATAGCCCTGATAGTGTCCCTGTGAGGCAATTGGAAGTTCATGCACACACAGAGTCTTGCAGAGCTGCTCGATTCATCAATGGTGGACGTGTGCTGTTGACCGGTTCTCCAGATTGCTCTATACTGGCTACGGATGTGGAGACCGGATCTACAATTACCCGTATTGATAATGCTCACGAGGCTGCAGTAAATAGATTGATAAACTTGACCGAGTCAACTGTTGCCTCAGGAGACGATGAGGGTTGTATAAAGGTTTGGGATACCAGAGAACGCTCTTGTTGCAATTCTTTTGATGCCCATGAAGATTACATTTCAGACATGACTTTTGCTTCTGATGCAATGAAACTGTTGACAACAAGTGGAGATGGGACTCTGTCTGTTTGCAATCTTCGAAGAAACACAGTACAAACTCGATCCGAATTTTCCGAAGATGAGTTGCTGTCTGTTGTTTTGATGAAGAATGGTAGGAAAGTTGTGTGCGGATCTCAAACTGGAATCATTCTGTTGTATTCATGGGGATGCTTCAAGGATTGTAGCGATCGATTTACCGATCTCTCTTCAAACTCTATTGATGCAATGTTGAAGCTTGATGAAGATAGAATTATTACTGGATCAGAGAATGGGATTATCAATTTGGTCGGGATATTACCCAACAGGGTCATCCAGCCAATAGCCGAACACTCAGAGTATCCTGTTGAGTGTCTCGCATTCTCTCATGATAGGAAGTTCCTTGGAAGCATCGCACACGATCAAATGTTAAAGGTACTTCTCTGTTCCGATTCCTTAAAATTTACTGGAATTCTGTCCTCTTCTTTCACATTTACACTAGACAGTGGTCATCTGAGCATTAAAAATGTTCGGATGAGGTTGCAACTATTTGGCTTAATATATGGCCTGCCAATCCGAGGTATCTTTGTTAATAATAATGGTGGATGGCTATGGGATTTGGATAGTATACTCCAAGATACAAAAAACACACAAACAAATGAAACTGGAGCGATTGATAGTGACGATGATGAGATGGAACTAGATAATGATCCTTCAAAGCTCAGTAGAGGGAACAAGAGAAAGAATGCAAATAATGGGAAAGCTCCAGGTGGTTCGAATAACTTCTTTGCCGATTTATAG 1230 0.4154 MEINLGKLAFDVDFHPSDNLVATGLINGDLHLYRYSPDSVPVRQLEVHAHTESCRAARFINGGRVLLTGSPDCSILATDVETGSTITRIDNAHEAAVNRLINLTESTVASGDDEGCIKVWDTRERSCCNSFDAHEDYISDMTFASDAMKLLTTSGDGTLSVCNLRRNTVQTRSEFSEDELLSVVLMKNGRKVVCGSQTGIILLYSWGCFKDCSDRFTDLSSNSIDAMLKLDEDRIITGSENGIINLVGILPNRVIQPIAEHSEYPVECLAFSHDRKFLGSIAHDQMLKVLLCSDSLKFTGILSSSFTFTLDSGHLSIKNVRMRLQLFGLIYGLPIRGIFVNNNGGWLWDLDSILQDTKNTQTNETGAIDSDDDEMELDNDPSKLSRGNKRKNANNGKAPGGSNNFFADL 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02554 409 Gene3D - 7 291 IPR015943 GO:0005515
Vimu5g02554 409 SUPERFAMILY WD40 repeat-like 10 289 IPR036322 GO:0005515
Vimu5g02554 409 FunFam WD repeat-containing protein 55-like 4 224 - -
Vimu5g02554 409 SMART WD40_4 124 163 IPR001680 GO:0005515
Vimu5g02554 409 SMART WD40_4 82 121 IPR001680 GO:0005515
Vimu5g02554 409 SMART WD40_4 251 291 IPR001680 GO:0005515
Vimu5g02554 409 SMART WD40_4 38 79 IPR001680 GO:0005515
Vimu5g02554 409 SMART WD40_4 1 34 IPR001680 GO:0005515
Vimu5g02554 409 SMART WD40_4 168 205 IPR001680 GO:0005515
Vimu5g02554 409 MobiDBLite consensus disorder prediction 362 409 - -
Vimu5g02554 409 PANTHER WD REPEAT-CONTAINING PROTEIN 55 8 289 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02554 12 214 Miscellaneous Gene Families AT5G08390 25.490 2.14e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02554 K24750 - gmx:100792826 551.977