Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02548 ATGAGAGGTTTTGCACGAAGCTCGAACTCGTTGATGAGGAAGTTGTTCCATGAAAGGAACGTTCAATCCCAATGCAGTAGTCGTTCGTACAGTCTCATCCCAATGGTGATTGAGCACTCTTCCCGAGGGGAGAGGGCTTACGACATCTTCTCGCGCCTCCTCAAGGAGCGCATTATCTGCATCAATGGACCCATCTCCGACGACACTGCTCACGTCGTCGTTGCGCAGCTCCTCTTCCTCGAATCCGAAAACCCTTCCAAACCCATCAACATGTACGTCAACTCCCCTGGTGGTGCCGTCACCGCAGGTACCCTTTTCATTTTATCGTCTCTTGTCTCTCTCTCTCTCTCTAATTGCGTTTACCTCTTCAAAATCGCATTTTTCGATGAACCCATTTTGCAACACCCCTAA 411 0.4964 MRGFARSSNSLMRKLFHERNVQSQCSSRSYSLIPMVIEHSSRGERAYDIFSRLLKERIICINGPISDDTAHVVVAQLLFLESENPSKPINMYVNSPGGAVTAGTLFILSSLVSLSLSNCVYLFKIAFFDEPILQHP 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02548 136 PRINTS Clp protease catalytic subunit P signature 88 108 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vimu5g02548 136 PRINTS Clp protease catalytic subunit P signature 48 63 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vimu5g02548 136 SUPERFAMILY ClpP/crotonase 32 105 IPR029045 -
Vimu5g02548 136 Gene3D - 18 110 - -
Vimu5g02548 136 Pfam Clp protease 42 104 IPR023562 -
Vimu5g02548 136 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 17 103 IPR023562 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02548 Vimu-Chr5 35883447 35883857 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02548 K01358 - gmx:100782585 162.54