Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02540 ATGGCCACTCTGCAATTCAGCTTCATCGACTCAACCTCCTTGATCAGGCCTTCTTTACATTCCTCGCGAACCTTCCCTCGGAATCGAAGCCTCCTCATCAAAGCCTCTTCTTCTTCTTCTTCTTCTTCCGATGACATTTCCCGGAGCAGGAGACGCTTCCTCGCCGAAACCGCCGCGATATCGCTTTCGCTTCCTCACTTTCCGGCGAGGGCCGAAGACACGCTTTCGGAGTGGGAGAGAGTGTACCTCCCTATCGACCCCGGCGTCGTGCTTCTCGACATCGCTTTTGTCCCTGACGACCCCAACCATGGTTTTCTTCTCGGGACGAGGCAAACAATTCTGGAGACGAAGGACGGAGGAAACACTTGGGCTCCGCGTTCGATTCCCTCTGCCGAAGATGAAGATTTCAACTATCGCTTTAATTCTATCAGTTTCAAGGGGAAGGAAGGCTGGATAGTTGGAAAACCTGCGATTCTGTTGTACACTGCTGATGCTGGAGAGAGCTGGGAGAGGATACCTCTCAGCGCTGAACTTCCAGGGGATATGGTGTACATAAAAGCGACTGGTGAGAAGAGTGCAGAGATGGTCACTGACGAAGGTGCAATATACGTTACTGCTAACAGGGGTTACAACTGGAGAGCTGCTGTTCAGGAAACTGTGTCAGCTACTCTTAACAGAACAGTTTCTAGTGGTATTAGTGGTGCAAGCTATTACACTGGGACTTTCAATACTGTCAATCGCTCTCCAGATGGAAGGTATGTTGCAGTCTCAAGTCGGGGCAACTTCTACTTAACCTGGGAGCCTGGTCAGCCATTCTGGCAGCCACATAATAGAGCAGTTGCCAGAAGAATACAGAACATGGGATGGAGAGCTGATGGTGGCCTTTGGCTTCTTGTTCGTGGAGGCGGTCTTTATCTCAGCAAGGGAACAGGTTTAACTGAAGAATTTGAGGAGGTTCCAGTTCAAAGCCGGGGTTTTGGCATTCTTGATGTCGGATATCGTTCAACGGATGAGGCTTGGGCAGCAGGAGGAAGTGGTATTCTTTTGAGAACTACTAATGGTGGCCAGTCATGGATCCGTGACAAAGCTGCTGACAACATTGCTGCAAATTTATACTCAGTGAAGTCAGTCTAA 1134 0.4974 MATLQFSFIDSTSLIRPSLHSSRTFPRNRSLLIKASSSSSSSSDDISRSRRRFLAETAAISLSLPHFPARAEDTLSEWERVYLPIDPGVVLLDIAFVPDDPNHGFLLGTRQTILETKDGGNTWAPRSIPSAEDEDFNYRFNSISFKGKEGWIVGKPAILLYTADAGESWERIPLSAELPGDMVYIKATGEKSAEMVTDEGAIYVTANRGYNWRAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLYLSKGTGLTEEFEEVPVQSRGFGILDVGYRSTDEAWAAGGSGILLRTTNGGQSWIRDKAADNIAANLYSVKSV 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02540 377 PIRSF Photosystem_II_Ycf48-like 41 377 IPR016705 -
Vimu5g02540 377 Gene3D - 135 360 IPR015943 GO:0005515
Vimu5g02540 377 PANTHER PHOTOSYSTEM II STABILITY/ASSEMBLY FACTOR HCF136, CHLOROPLASTIC 18 376 - -
Vimu5g02540 377 SUPERFAMILY Oligoxyloglucan reducing end-specific cellobiohydrolase 77 362 - -
Vimu5g02540 377 Pfam Photosynthesis system II assembly factor YCF48 74 375 IPR028203 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02540 Vimu-Chr5 35845758 35848854 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02540 - - gmx:100810566 700.279