Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02539 ATGGAGAAAGAGAAAGAAATGGCAGAAGGAGTGTTGCAGTTTGATGAGACAACGATAAGCGCTCAAAGAGCTGCAAGGAGTGGAAACTGGAGAATGTTCAAGAAAATCTTGGAGAAAGACCCAAAGCGTTTGGTGGAGCCTTTTGACTTGTTTGGGAACACTGCCATTCACATTGCAACACGTTCCAACAATCCAGGGCTTCTCCGTGAGTTGTTGGAAATGCTGAGTGAGAAGGAGAGGTGGCATGCATTGAGGAAGGGAAATTGTGTGAATAACACCCTTCTCCATGAGATCATCTTCTGTACTACGGTGGAGATGGCCGGTGTTGTGTTGAAGTTTGAGAATGAGGCTGCACCGGAAGACATACCAGAAGACATAACAGAAGAAAAGAAAAGACTGCCATTGCTAGAGATCGTAAATGACTCAGGTGAAACCCCTCTCTTTAGAGCTGCTAAACTTGGAAGGCTTAAGATGCTCAAGTATATGGCCAATCATGCTGAGGGTGACATAAGAAGGCTTTTTGTTAGATTTGACAAATATTCCATTCTTCATGCAAGCATTCTTGGACAGTTTTTTGATGTTGCTATCTGGTTGTTGAAAATGGATGAGAAACTAGCTCAACACAAGGATATGAATGGAATGACATGTCTTCAACTTCTATCCAATATGCCACTTGTATTTTGGAGCCAAGCCCCTGCCATGGGAACAGTGAAGAATCTTATATATAACAGTGCATATCTCTGTCTCAATTTTCCATTTTCCCAAATCCACATATATTATGTTTCGATCATTTTTTTCAAAACGCTTCCTGAGGAAGGATATGAAATCCATGATGATGATGAAAATGGCAGTGCTGACTACACACGTCAAAGGAACGATATAGAAAGCGGCCAACAAGACAAGGCAAAGTTTCCTAGTTCAGAGTTTGATGGGATTGGACGTATATGGCAACTAAAGAAACAGCATAAATTAGCTGAGCATCTGTCTGAGCTGTTAGTGGAGAAGGACTTTTCATGGCAGATTTCGTTTCACGAAAACTTCCAACCCTTGATTGTATTGCCGGTTCTTTCCTCCAAATCAGACAGGATAAAACACCTTCACCACACGAAGGAGATGCACAAGATCAACAGTGAAATGTCTCGTTCCAGAAGTTACAGACCTATAACCACCGCAACAAGCTTTCCCCATTCTCAGAACTACACGCCACTTCTCATGGCAGCTGGCTCAGGAATCGTGGAAATCGTTGGGAAAATCATTGACAAGTTTCCGGAAGCCATTTGTCACGTTAGCCAGGATGAACATAACGTTCTACACATGGCTGTGAAGCACCGTCAGCTGAAGATCTTTAACATGCTAAAGAAACATTCAGCATTCAAATCATTGATATTCCGGATAACTGCAGAAGGTCGTACTCTCTTGCACCAAATTTCGAGAATGGAGTTTTACGTAGAGCAGCACCTACCTGGTGTTGCATTCCAACTCCAAGACGAGTTGCGCTGGTACGAACGAGTGAAAGACATTGTTCCAGCATACTACCTGATGCACTGCGACAAAGACGGGCTAACAGCGGAAGATGTTTTGGAAATGGAGCATAGGGAGATGCACAAAGAAGCAAAAGGGTGGATTAAGGAAACGGCACAGTCATGCTCAACCGTGGCTGTCCTTGTTGCCACGGTGGTTTTTGCGGCGGCCTACACCATCCCAGGTGGCACTAATCAGAACAATGGCACGCCTTTTTTTCTGGGTTCTCGCGTGTTCCTGTTTTACACCGTAACAGACGTTGTGGCACTCGTGAGTTCACTGGCATCAGTGGTGATGTTTCTGTCAATCCTGACATCCCCTTTTGAGCTGTGGGATTTCCGAAGGTCTCTGCCGCAAAAACTGAGCTTAGGGTTTGCCTGTCTCTTCTTCTCGCTGGTGTGCACGATGCTGACATTCAGCGCAACAGTTTTGCTGACCATTCGGTTGGAGAATCACCAGAAATGGGCTTCGGTTTTGTTTTGCTGTGCTGTGTTCTTTCCTGTGGCATTCTTTTGGAGAATGCAATTTCCACTTTACAAGATGATTCAACATCTCGCCAAGCGCCTCTTCAAGACGCTAAGACAAGCAGTGCCAACAACGTTTGTCAAATATTCCAGGAAAAGGGCTCAGACAAGAAATTACAACGTTATCAATGACTAG 2181 0.4429 MEKEKEMAEGVLQFDETTISAQRAARSGNWRMFKKILEKDPKRLVEPFDLFGNTAIHIATRSNNPGLLRELLEMLSEKERWHALRKGNCVNNTLLHEIIFCTTVEMAGVVLKFENEAAPEDIPEDITEEKKRLPLLEIVNDSGETPLFRAAKLGRLKMLKYMANHAEGDIRRLFVRFDKYSILHASILGQFFDVAIWLLKMDEKLAQHKDMNGMTCLQLLSNMPLVFWSQAPAMGTVKNLIYNSAYLCLNFPFSQIHIYYVSIIFFKTLPEEGYEIHDDDENGSADYTRQRNDIESGQQDKAKFPSSEFDGIGRIWQLKKQHKLAEHLSELLVEKDFSWQISFHENFQPLIVLPVLSSKSDRIKHLHHTKEMHKINSEMSRSRSYRPITTATSFPHSQNYTPLLMAAGSGIVEIVGKIIDKFPEAICHVSQDEHNVLHMAVKHRQLKIFNMLKKHSAFKSLIFRITAEGRTLLHQISRMEFYVEQHLPGVAFQLQDELRWYERVKDIVPAYYLMHCDKDGLTAEDVLEMEHREMHKEAKGWIKETAQSCSTVAVLVATVVFAAAYTIPGGTNQNNGTPFFLGSRVFLFYTVTDVVALVSSLASVVMFLSILTSPFELWDFRRSLPQKLSLGFACLFFSLVCTMLTFSATVLLTIRLENHQKWASVLFCCAVFFPVAFFWRMQFPLYKMIQHLAKRLFKTLRQAVPTTFVKYSRKRAQTRNYNVIND 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02539 726 SUPERFAMILY Ankyrin repeat 392 476 IPR036770 -
Vimu5g02539 726 Pfam Domain of unknown function 540 651 IPR026961 -
Vimu5g02539 726 SUPERFAMILY Ankyrin repeat 23 225 IPR036770 -
Vimu5g02539 726 SMART ANK_2a 432 461 IPR002110 GO:0005515
Vimu5g02539 726 SMART ANK_2a 178 207 IPR002110 GO:0005515
Vimu5g02539 726 SMART ANK_2a 51 80 IPR002110 GO:0005515
Vimu5g02539 726 SMART ANK_2a 142 172 IPR002110 GO:0005515
Vimu5g02539 726 SMART ANK_2a 398 429 IPR002110 GO:0005515
Vimu5g02539 726 Gene3D - 365 492 IPR036770 -
Vimu5g02539 726 Gene3D - 11 246 IPR036770 -
Vimu5g02539 726 PANTHER CASKIN 53 689 - -
Vimu5g02539 726 FunFam Uncharacterized protein 365 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02539 Vimu-Chr5 35841783 35844656 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02539 397 669 Miscellaneous Gene Families AT3G12360 23.125 1.61e-12 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02539 - - vra:106778264 1318.52