Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02535 ATGAAGAACCTGAACATCTCTTTGTGCGTGCTTCTCATAGCTCTTGTGCGCTTAGGAGGAAGTGCACCATCAAGCTTCAACTATGGTGATGCCCTTGACAAGAGTTTGTTGTTCTTTGAAGCACAAAGATCTGGAAAGCTACCACTGCAGCAGCGAGTCAAGTGGCGTGGTGATTCTGGCCTCCAAGATGGTTTTCAGCAAGGAGTGGACCTGGTGGGAGGGTACTATGATGCAGGAGATCATGTGAAGTTTGGGTTGCCAATGGCCTACAGTGTCACAATGCTTGCATGGGGAGCCATCGAATTCAGCAAGGAAATTACGTACTTGAACCAAATGGGACATGCATTATGGGCAATTAAATGGGGAACTGATTACTTTGTCAAAGCACACACTCAACCCAATGTTCTTTGGGGACAGGTGGGAGATGGAGTTTCTGATCATTACTGCTGGGAGCGTGCTGAAGACATGACTACATCAAGAGGTGCCTACAAAATTGATGAACAACACCCTGGCTCTGATCTGGCAGGTGAAACTGCAGCTGCATTGGCTGCTGCAGCTTTGGCTTTCAGGCCCTACAATTCTTCTTACTCTGGTCTTCTGCTAGTTCATGCAAAACAGCTCTTCACATTCGCAGATAGGTTCAGAGGTCTCTATGATGACTCTATTTCAAGTGCCCAGCAATTCTATACTTCTTCCGGTTACTCAGATGAATTATTATGGGCTGCCACGTGGCTACACCTGGCAACTGGAGATGAATACTACCTAAAGTATGTGGTGGACAATGCTGTGTACATGGGTGGAACTGGCTGGGCAATGAAAGAGTTCTCTTGGGACAACAAATATGCTGGTGTGCAGATCCTCCTAACAAAGATATTACTGGAAGGGAAAGCTGGTCCTTATGCTGATACACTAAAGCAATACCAGGCCAAGGCAGATTATTTTTCGTGTGCCTGCTTGCAAAAGAATGATGGTTACAATGTCCAGAAAACACCAGGTGGCTTACTATATGTACGTGAATGGAACAACATGCAGTATGTTTCTTCTGCTTCATTCCTTTTAGCTGTTTACTCTAATTACCTCTCAGCAACAAAAGCAAATCTCAACTGCCCAGATGGACAAACTCAGCCTCAGGAGCTCCTCAACTTTGTTAAGTCTCAGGCTGATTATATCCTTGGTAATAACCCAGCTGATATGAGCTACTTGGTTGGATATGAAGCAAAATATCCTCTTCATGTTCACCACAGAGGCGCTTCCATTGCTTCAATCTTTTCTCTTCACAGTGAGGTTGGCTGCACCCAAGGATTTGAGCTGTGGTATAACCGTGCTGAGTCAAATCCTAATGTCATCTTTGGTGCCCTTGTGGGTGGCCCAGATAAAAATGATGGCTTCTCTGATGACAGATCCAATTATGAACAAACTGAGCCTACACTTTCAGGTTCTGCTCCTCTTGTGGGCATCTTTGCTAAACTGCAGAGTTTGTATGGTAATATAGGTAAAGGCGCCCCGGTGCAATTTCTTCACTCAATAAGTAGCTCATGGAATGTTGGAGGTGCAACCTACTACCGTCACAGGGTCATAATCAAGAATACTTCTTCTAAGCCAATTTCAGATCTTAAGTTGGTGGTTAAGGACCTCACAGGCTCCTTATGGGGTCTCTCTTCAACAGAAGAAAAGGACACCTATGAACTTCCTCAATGGCAGAAGGTTTTGAATCCTGGCTCTGAGTGTATATTTGTATATGTTCAAGGCGGACCCCAGGCTAAAGTTTCCATTAAAAGCTTCCAATGA 1788 0.448 MKNLNISLCVLLIALVRLGGSAPSSFNYGDALDKSLLFFEAQRSGKLPLQQRVKWRGDSGLQDGFQQGVDLVGGYYDAGDHVKFGLPMAYSVTMLAWGAIEFSKEITYLNQMGHALWAIKWGTDYFVKAHTQPNVLWGQVGDGVSDHYCWERAEDMTTSRGAYKIDEQHPGSDLAGETAAALAAAALAFRPYNSSYSGLLLVHAKQLFTFADRFRGLYDDSISSAQQFYTSSGYSDELLWAATWLHLATGDEYYLKYVVDNAVYMGGTGWAMKEFSWDNKYAGVQILLTKILLEGKAGPYADTLKQYQAKADYFSCACLQKNDGYNVQKTPGGLLYVREWNNMQYVSSASFLLAVYSNYLSATKANLNCPDGQTQPQELLNFVKSQADYILGNNPADMSYLVGYEAKYPLHVHHRGASIASIFSLHSEVGCTQGFELWYNRAESNPNVIFGALVGGPDKNDGFSDDRSNYEQTEPTLSGSAPLVGIFAKLQSLYGNIGKGAPVQFLHSISSSWNVGGATYYRHRVIIKNTSSKPISDLKLVVKDLTGSLWGLSSTEEKDTYELPQWQKVLNPGSECIFVYVQGGPQAKVSIKSFQ 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02535 595 FunFam Endoglucanase 24 495 - -
Vimu5g02535 595 Pfam Glycosyl hydrolase family 9 28 486 IPR001701 GO:0004553|GO:0005975
Vimu5g02535 595 PANTHER ENDO-1,4-BETA-GLUCANASE 8 492 - -
Vimu5g02535 595 Gene3D - 24 494 IPR012341 GO:0005975
Vimu5g02535 595 Pfam Carbohydrate binding domain CBM49 504 582 IPR019028 GO:0030246
Vimu5g02535 595 SUPERFAMILY Six-hairpin glycosidases 25 496 IPR008928 GO:0005975
Vimu5g02535 595 SMART CBM49_2 503 583 IPR019028 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02535 Vimu-Chr5 35812688 35817017 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02535 26 594 Glycoside Hydrolase AT1G48930 67.893 0.0 810
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02535 K01179 - gmx:100812170 1105.89