Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02527 ATGGCAAAGGAGGGAAGTGATGAAGTAAACGACGCCGTCGATGGCACGGAAGAGGAAGAGCACGCACGAGAGGAAGATGACAATGACATGGAAGAAGAGGATGAATATACTTTCAGGTTCGAAAACGGAATCAATCCTTTGGACTTTGTCGACAACAATGACGGCCTTCTACCTTACGAGCGATTCGAGCGTCTTGAACAGGAAGCTCTTGCGGATAAAAAGCGAAAAGCTGAATCATGCCCCAGTGAAGAGCCACCTCCTAAGATGGTTAGGGAAAGTGATATTTCCGGGTCAAAGATAGCTGAGATAATGGAAGCAATGAATTATCATGGTGTGCGCAAGAGATCAAGAAAATTTGCCAGTCATAAGCAAAGGCTACACCAGAAAGAAGTTGATAACTTTCCTTTAATTCTTTTATGTTATAAGCCTAAAAAGAGAGGCAGGCGAAAAGGATCGAAGAATAAAATGGACCCTAAGCTAACACAGATGCTGGGTGACGCCACAATTCACTATTCAGGACGCCGTTATGACGAGAGAGATATGGTTGCCACCAGGAGAAACTCATTAGCTGGAAGTTATATTCATGTTCCTGGAAATGCTCTAACAGTTTCTATTTTTGTTTGTCTCAACTATGATAGATGGAATAGCTTTTGCAGATTATTTATACATTTCTTTGTTATTTTGCAGGCTAAAGCTGTGGCGCTTGAAGTTATTAAGTTGGCACCGAATGTGGCTGAGTCTTATCACACCCTTGGACTTGTCTCTATTTCACTCCAGGATGTTAAAAGGGCAATGGCATTTTACCTAATTGCTGCTCATTTGGATCCTAAAAAATCATCTTTTTGGGAAATCATTTATGACTTGTCCGAAAAACAAGGTCAAGGTTATATTGATCAAGCACGATATTGTCTTTTAAAAGCAATAACAGCAGATCCCAAAAAAATTACTCTTAGACTTCATCTTGCAAACCTTTATGTTAATCGTGGAGACTATCAAAAAGCTGCTGTTACATATGAGCAAGTACATCAACTCTGTTATGGGAATGATGATCCACTGAAAGAGGCAGCTAATTTGTACAAAAAATGTGGTCAAGTTGAGCATGCTATTTGTATTCTTGAAGACTATCTTAAGAGTCAACCGGACAGAGCAAATGCGAGTGTAGTTGATCTGCTGTGTACCATATTGATGGAAACTAAGGAACATGACAGAGCTTTGCAGTATATTAAACATGCCCAAGCTGCAAATGCATGGGAAGAATTACCGTTGAATTTGAAAATTAAGGCTGGAATTTGCCATGCTCATCTTGGAAAAATGGATATGGCTCAGGTTCTCTTCAATGATTTGAAACCAGAGAATGCAAGCAAGCATGTTGACTTGGTTATTGAGGTTGCTGATTCATTAATGGGTCTTGAACATTATAACGCTGCATTGAATTACTATTTGATGTTGGAAGGAAATACTGGAAACGAAAATGGTCCTCTATATCTGAAACTTGCTGAATGTTACAGGTCTTTGAAAGAAAGTTCACAAGCAATTACTTTTTTTTACAAAGGCAAGATTTTTTTTTTAAAGAGAATGTTATTTACCCTTGAAATACTACAAGATGACGTTGATGCACGGATAACTCTAGCTTCCCTTCTGCTTGAAGAGGGAAAAGAAGATGAAGCAATTTCCTTGTTGTCTCCTCCAAATGATTCTGACTCTGGTGATGCAAATCCTGAAAAGTCAAATAGATGGTGGGTTAATAAAAGAATAAAACAGAAGCTCTGCAACATTTATAGGAATAGAACGACACGTGATTTTGTGGATAAAGTTTTCCCTTTGGTTCGTGAATCATTAGATGTTGCAACTCTTCGACAGAAGGGTAAATCAAAAAGGCGACTCACCAAAAGAGATCTGGTCGAAAGGGTTAGGATGGTAGATGGTCCAGAAAATGATAATGTATTTCGAGGATTCAGGCCCGTAGCTGCACCATCTGACCGGTTGAAAGCTTCCAGGGCAAAAAAGTTGCTGCAGAAGATGGCAATTGAAAAGGAGAAAAGAAAAGCTGAGGCACTGGCCTCCGGAATTGATTGGCTAAGTGATGATTCAGATGATGAACCTCAGATAGAAAACAGAGAACCTCCCTTGTGCAATCTTCGGAAATATGAAGAACATCACCAGCTAATAATCGATTTGTGCAAGGCATTAGCATCCTTGCAAAGGTATTGGGAAGCACTGGAGATTATTAATCTCTCTCTAAGATTGGCTGGTACATCTCTGTCTACTGACAAGAAAGAGGAACTTCGATCCCTTGGAGCTCAAATGGCATACAGCACCACAGATCCTAAACATGGGTTTGATTGTGTAAAATACATTGTTCAGCAACATCCACACAGTGTTGCAGCTTGGAATTGCTACTACAAGGTTATCTCAAGATTGGAAAACCGAGATACAAGACATTATAAATTTGTACGTGTCATACAAGGAAAGTTTGTGGACTGTGTGCCTCCTATTCTAATTTCTGGCCATCAGTTTACCATATTTAGCCATCATCAAGATGCAGCAAGGAAATACCTTGAAGCTTACAAACTATTGCCAGAGAATCCCTTGGTTAATCTCTGCGTTGGAACAGCCTTGATCAACTTAGCATTGGGTTTCAGACTTCAGAACAAGCATCAATGTCTTGTACAAGGTTTAGCATTCCTCTACAACAACTTGAGAATCTGCGAGAACAGCCAGGAATCCTTGTACAACATAGCTCGGGCCTATCATCATGTTGGCCTTGTAACTCTGGCGGCTGTTTATTATGAGAAAGTGATTGCTATTCGCGAGAAAGACTGTCCAATTCCAAAACTTCCCAATGAAAATCCAGATGTCATCGAAAATCATAAACCTGGTTACTGCGACCTTCGCAGAGAAGCAGCTTACAATTTGCATTTAATCTACAAAAAAAGTGGCGCTCTTGATCTTGCTAGGCAAGTTCTCAAAGATCACTGTACCTTTTGA 2988 0.3993 MAKEGSDEVNDAVDGTEEEEHAREEDDNDMEEEDEYTFRFENGINPLDFVDNNDGLLPYERFERLEQEALADKKRKAESCPSEEPPPKMVRESDISGSKIAEIMEAMNYHGVRKRSRKFASHKQRLHQKEVDNFPLILLCYKPKKRGRRKGSKNKMDPKLTQMLGDATIHYSGRRYDERDMVATRRNSLAGSYIHVPGNALTVSIFVCLNYDRWNSFCRLFIHFFVILQAKAVALEVIKLAPNVAESYHTLGLVSISLQDVKRAMAFYLIAAHLDPKKSSFWEIIYDLSEKQGQGYIDQARYCLLKAITADPKKITLRLHLANLYVNRGDYQKAAVTYEQVHQLCYGNDDPLKEAANLYKKCGQVEHAICILEDYLKSQPDRANASVVDLLCTILMETKEHDRALQYIKHAQAANAWEELPLNLKIKAGICHAHLGKMDMAQVLFNDLKPENASKHVDLVIEVADSLMGLEHYNAALNYYLMLEGNTGNENGPLYLKLAECYRSLKESSQAITFFYKGKIFFLKRMLFTLEILQDDVDARITLASLLLEEGKEDEAISLLSPPNDSDSGDANPEKSNRWWVNKRIKQKLCNIYRNRTTRDFVDKVFPLVRESLDVATLRQKGKSKRRLTKRDLVERVRMVDGPENDNVFRGFRPVAAPSDRLKASRAKKLLQKMAIEKEKRKAEALASGIDWLSDDSDDEPQIENREPPLCNLRKYEEHHQLIIDLCKALASLQRYWEALEIINLSLRLAGTSLSTDKKEELRSLGAQMAYSTTDPKHGFDCVKYIVQQHPHSVAAWNCYYKVISRLENRDTRHYKFVRVIQGKFVDCVPPILISGHQFTIFSHHQDAARKYLEAYKLLPENPLVNLCVGTALINLALGFRLQNKHQCLVQGLAFLYNNLRICENSQESLYNIARAYHHVGLVTLAAVYYEKVIAIREKDCPIPKLPNENPDVIENHKPGYCDLRREAAYNLHLIYKKSGALDLARQVLKDHCTF 995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02527 995 MobiDBLite consensus disorder prediction 11 36 - -
Vimu5g02527 995 ProSiteProfiles TPR repeat profile. 245 278 IPR019734 GO:0005515
Vimu5g02527 995 MobiDBLite consensus disorder prediction 1 49 - -
Vimu5g02527 995 Gene3D Tetratricopeptide repeat domain 227 419 IPR011990 GO:0005515
Vimu5g02527 995 MobiDBLite consensus disorder prediction 70 92 - -
Vimu5g02527 995 SUPERFAMILY TPR-like 232 395 IPR011990 GO:0005515
Vimu5g02527 995 Pfam Tetratricopeptide repeat 319 344 IPR019734 GO:0005515
Vimu5g02527 995 SMART tpr_5 315 348 IPR019734 GO:0005515
Vimu5g02527 995 SMART tpr_5 245 278 IPR019734 GO:0005515
Vimu5g02527 995 SMART tpr_5 907 940 IPR019734 GO:0005515
Vimu5g02527 995 SMART tpr_5 492 525 IPR019734 GO:0005515
Vimu5g02527 995 SMART tpr_5 720 753 IPR019734 GO:0005515
Vimu5g02527 995 SUPERFAMILY HCP-like 355 557 - -
Vimu5g02527 995 SUPERFAMILY TPR-like 535 989 IPR011990 GO:0005515
Vimu5g02527 995 Pfam Tetratricopeptide repeat 908 940 IPR019734 GO:0005515
Vimu5g02527 995 Gene3D Tetratricopeptide repeat domain 657 992 IPR011990 GO:0005515
Vimu5g02527 995 Gene3D Tetratricopeptide repeat domain 422 596 IPR011990 GO:0005515
Vimu5g02527 995 FunFam General transcription factor 3C polypeptide 3 625 994 - -
Vimu5g02527 995 PANTHER TRANSCRIPTION INITIATION FACTOR IIIC TFIIIC , POLYPEPTIDE 3-RELATED 229 995 IPR039340 GO:0006383
Vimu5g02527 995 MobiDBLite consensus disorder prediction 70 90 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02527 K15201 - gmx:100804533 1419.83