Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02525 ATGAAAAGAGGATTTGGTGTAAGAGCTTTGCTCATTTCCTTTCGAAACTGTAACCCTCTTCCGCCGCCGCTACTACCACTGTCACTCCCCTTTCGCGCCGCTAGATCTCTTCATTCGCCGTCGTCTTCCGTCGCAGCCATGCCCGGAGCTGAGACTCAGCATGTGGAGTGGCCGGCGAAGCGCGTGAGGGACACTTTCATGGATTTCTTCGAAGGCAAGAATCACGTCAACTGGAAGTCCAGCCCCGTCGTTCCCTTCAATGACCCCACTCTTCTCTTCGCCAACGCTGGTATGAACCAGTTCAAGCCAATTTTTTTGGGTACCGCGGATCCCAACACTGCCTTGAGTAAACTCTCTCGTGCTTGCAACACACAAAAGTGCATTCGAGCTGGTGGTAAACACAATGATCTTGATGATGTAGGGAAGGACACCTACCATCACACCTTCTTTGAGATGTTGGGAAATTGGTCCTTCGGGGATTACTTTAAAGCAGAGGCCATCAGCTGGGCGTGGGAGCTTCTAACCGAAGTTTACAAGTTACCTTCAGATCGCTTGTATGCCACATATTTTGGTGGTGATGACAAGGCTGGTCTTGTCCCTGATTTTGAGGCTAGAGATATATGGCTGAAGTTTTTGCCTCCTGGACGTGTGCTTCCTTTTGGATGTAAAGACAATTTCTGGGAAATGGGTGATACTGGTCCTTGTGGACCTTGCACTGAAATACATTTTGACAGAATTGGTAACCGTGATGCTGCATCATTGGTAAATAACGATGATCCTACTTGCATTGAGATATGGAACCTTGTCTTTATTCAGTTCAATAGGGAGGCTGATGGCTCTCTTAAACCGCTTCCAGCAAAGCATGTTGATACGGGCATGGGTTTTGAACGATTGACCTCTATACTACAAAATAAAATGAGCAATTATGACACTGACGTCTTCATGCCAATCTTTGATGTTATTCAGAAGGCAACTGGTGCCAGACCATATTCTGGTAAGGTCGGAGCAGATGATGTAGATAAAATTGACATGGCATACAGGGTTGTTGCAGATCACATCAGAACTCTTTCATTTGCCATTGCTGACGGGTCTCGTCCTGGTAATGATGGCCGTGAGTATGTTCTAAGACGAATACTTCGTCGAGCTGTGCGGTATGGACGAGAAGTGCTAAAAGCTAAAGAGGGATTTTTCAGTGGGCTTGTAAGTGTGGTGGTGAATTTGATGGGTGATGTTTTCCCTGAGCTAAAACAACAGGAAACTCACATTCAAAATGTAATTGAAGAGGAGGAGGAAAGTTTTGGAAGAACCTTAATTAAGGAAGCATTTGTCTTGTGGGATACATATGGATTCCCATTAGATCTCACTCAGCTGATGGCGGAAGAAAAGGGATTAGTTGTTGATGTTAAAGGTTTTGATAGGGCAATGGAGGCTGCAAGAGAGAGATCCAGAAGTGCTCAAACAAAGCAAGCTGGTGGGGCCATTGTCATGGATGCTGATGCTACCTCTGCATTGCACAAAAGGGGCATAGCCCCAACAAATGATAGCTTCAAATATGCTTGGTTCAAGGACCATGAGAGTGTGGTACAAGCAATATATACTGGTTCTGAGTTTGTTGATACCGTTAATACTGGTGATGATGTTGGTTTAGTTCTGGAATCTACAAGCTTCTATGCTGAGCAAGGTGGTCAGATTTTTGATACTGGATCACTTGAGGGTACAATTGGTTCATTTCAAGTGCATAATACTCAAGTTTACGGAGGTTTTATTCTTCACATTGGTAACGGAACCGGTGTCTCTGTTGGTGACAGAGTAGTATGCAAGGTTGACTATGGAAGACGTGCCCTCATAGCCCCTAACCATACCTGCACGCACATGTTAAACTTTGCTCTTAGGGAAGTACTTGGCAATCATATTGACCAGAAAGGATCCATTGTTCTACCTGAAAAATTGAGATTCGACTTTTCTCATGGCAAGCCTGTTGACGCCGACAATTTAAGGAGAATTGAGGCAATTGTTAATGAGCAAATTAAAGCTGAATTGGATGTAAGTGCAAAGGAAGCAACTCTTGCCGAAGCCAAGCGTATCAATGGTTTACGAGCTGTCTTTTTTCTCTTTATTATTCGAGGCTCTTCATTTTTAGTTGATTATCTAGGCACCCATATTTCAAATACACGAGAGGCAAAAGCTTTTGCACTTTTATCTGAGGAGGGCATTGCAAAAGGCATACGCAGAATAACAGCTGTCACAACTGATCGTGCTTATGATGCAATGAAAGTGGCAGATGAATTGGAGCAGCAAGTAGATGAAGCAGCTAAGTTAGATGGAAGTTTGTTGGAAGAGAAAGTTTCATCATTGAAAAACAATGTTGAAACGATATCAATTCCTGCTGCCAAGAAAGCTGACATCAAAACAAAGATAGCCCGACTTCAGGACCAAGTGAGAAAAGCACAGAAGCAGATTGCTGAGGAAAACAAGCGTAAAGCTGTAAATATTACAGCTGAGAAAGCTGAGCTTGCTGCTTCTGACGGGAAAACTTTTTGCATATCTCGTGTTGATGTTGGTCTGGATGTAGCTGCAGTTCGTGAGGCTGTTACAAAAGTTATGGACCAAAAGGGCTTATCTGTGATGGTTTTTAGCACGGATGAATCTACAAACAAGGCTGTAATTTGTGCTGGGGTGCCAGAGAAAGGAGATAAAGGTAAGCTGGATGTGGCAGAGTGGCTGAGTAATGCGTTGGGGCCTCTAAAAGGGAGATGTGGTAAAGGAAAAGGTGGTCTTGCAACGGGTCAGGGTACAGATGCAGCACACGTTAACGAGGCTATGGATCTTGCAGAAAAATTTGCATCAATGAAGTTGAGTTAA 2862 0.4403 MKRGFGVRALLISFRNCNPLPPPLLPLSLPFRAARSLHSPSSSVAAMPGAETQHVEWPAKRVRDTFMDFFEGKNHVNWKSSPVVPFNDPTLLFANAGMNQFKPIFLGTADPNTALSKLSRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKAEAISWAWELLTEVYKLPSDRLYATYFGGDDKAGLVPDFEARDIWLKFLPPGRVLPFGCKDNFWEMGDTGPCGPCTEIHFDRIGNRDAASLVNNDDPTCIEIWNLVFIQFNREADGSLKPLPAKHVDTGMGFERLTSILQNKMSNYDTDVFMPIFDVIQKATGARPYSGKVGADDVDKIDMAYRVVADHIRTLSFAIADGSRPGNDGREYVLRRILRRAVRYGREVLKAKEGFFSGLVSVVVNLMGDVFPELKQQETHIQNVIEEEEESFGRTLIKEAFVLWDTYGFPLDLTQLMAEEKGLVVDVKGFDRAMEAARERSRSAQTKQAGGAIVMDADATSALHKRGIAPTNDSFKYAWFKDHESVVQAIYTGSEFVDTVNTGDDVGLVLESTSFYAEQGGQIFDTGSLEGTIGSFQVHNTQVYGGFILHIGNGTGVSVGDRVVCKVDYGRRALIAPNHTCTHMLNFALREVLGNHIDQKGSIVLPEKLRFDFSHGKPVDADNLRRIEAIVNEQIKAELDVSAKEATLAEAKRINGLRAVFFLFIIRGSSFLVDYLGTHISNTREAKAFALLSEEGIAKGIRRITAVTTDRAYDAMKVADELEQQVDEAAKLDGSLLEEKVSSLKNNVETISIPAAKKADIKTKIARLQDQVRKAQKQIAEENKRKAVNITAEKAELAASDGKTFCISRVDVGLDVAAVREAVTKVMDQKGLSVMVFSTDESTNKAVICAGVPEKGDKGKLDVAEWLSNALGPLKGRCGKGKGGLATGQGTDAAHVNEAMDLAEKFASMKLS 953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02525 953 PRINTS Alanyl-tRNA synthetase signature 290 303 IPR002318 GO:0000166|GO:0005737
Vimu5g02525 953 PRINTS Alanyl-tRNA synthetase signature 371 384 IPR002318 GO:0000166|GO:0005737
Vimu5g02525 953 PRINTS Alanyl-tRNA synthetase signature 263 274 IPR002318 GO:0000166|GO:0005737
Vimu5g02525 953 PRINTS Alanyl-tRNA synthetase signature 347 363 IPR002318 GO:0000166|GO:0005737
Vimu5g02525 953 PRINTS Alanyl-tRNA synthetase signature 135 146 IPR002318 GO:0000166|GO:0005737
Vimu5g02525 953 SUPERFAMILY Translation proteins 535 608 IPR009000 -
Vimu5g02525 953 FunFam Alanine--tRNA ligase, cytoplasmic 609 703 - -
Vimu5g02525 953 Pfam DHHA1 domain 808 947 IPR003156 GO:0003676
Vimu5g02525 953 NCBIfam alanine--tRNA ligase 62 930 IPR002318 GO:0000166|GO:0005737
Vimu5g02525 953 SUPERFAMILY Class II aaRS and biotin synthetases 59 309 IPR045864 -
Vimu5g02525 953 SMART tRNA_SAD_4 707 746 IPR012947 GO:0004812|GO:0005524|GO:0043039
Vimu5g02525 953 Coils Coil 799 826 - -
Vimu5g02525 953 CDD AlaRS_core 59 305 - -
Vimu5g02525 953 Gene3D - 839 948 - -
Vimu5g02525 953 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 310 490 IPR018162 GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419
Vimu5g02525 953 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 57 759 IPR018165 GO:0003676|GO:0004813|GO:0005524|GO:0006419
Vimu5g02525 953 Pfam tRNA synthetases class II (A) 62 610 IPR018164 GO:0000166|GO:0004813|GO:0005524|GO:0006419
Vimu5g02525 953 FunFam Alanine--tRNA ligase, cytoplasmic 56 306 - -
Vimu5g02525 953 Hamap Alanine--tRNA ligase [alaS]. 57 952 IPR023033 GO:0004813
Vimu5g02525 953 FunFam Alanine--tRNA ligase 511 607 - -
Vimu5g02525 953 PANTHER ALANYL-TRNA SYNTHETASE 718 950 - -
Vimu5g02525 953 SUPERFAMILY ThrRS/AlaRS common domain 608 770 IPR018163 GO:0000166
Vimu5g02525 953 Gene3D - 519 608 - -
Vimu5g02525 953 Gene3D Bira Bifunctional Protein; Domain 2 58 306 IPR045864 -
Vimu5g02525 953 FunFam Alanine--tRNA ligase 841 948 - -
Vimu5g02525 953 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 718 745 IPR012947 GO:0004812|GO:0005524|GO:0043039
Vimu5g02525 953 Gene3D - 609 703 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02525 Vimu-Chr5 35720692 35733759 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02525 K01872 - gmx:100788271 1645.56