Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vimu5g02515 | ATGGCTTCGCCGGCGTGGTTGCCGCAGGAGGCGAAGCCACCTGTGTCCGGAGAAACGTCTCTTCCTATGGCTTCTCCCACTCCTAATTCCGCTCATGCAACTCCTTCTACTGGTAAACCTACTCCCACCTTTTTGCTTTCGATTTATCGAATGTTATTTTTGCTGAGTCAATTCGCGAAACGGCTCATTCATAATGCAACTGCGTTTGTAGCTCCGGCACCGGCAACTCCATTTCCTCACGGCGTTCTTCAGAATGCCAATGTTTCGGGAAGCCCTCAGCAGTCATCGACACATGATGTCAGTATAGTACAGAGTTATTTGCTTCTAGTGTTAAGTTTATTATTCAATGGGTTTGTGGTGATAAAATCCAATTCAACGGTAAACCCTGTAGTTTTTCAACCTCCAGTTCCCGGTGTCTCGTCGCATGCTGCTCTTTCATTTTCATATAATGTTCCCCAGGGTGGTGGTGCTTTTTCTAGCAGCCAACAGCATACTCAATCTAGTGGTAAAATCTCCGAATCTGTTGCACAGGATGTTACTAAATTGTCATCTGCAGCAAGTACCCCACATTCCATCCCTGCTCATACTTCTACAACGATAATGCCTCCCTCTGATCCTAATTATCGTCCAACTACTTCGTGGATGCCCACTGCCATGTCTTTTCCTTTGCATCCTGTAATGCCTACTCCAGGAAATCCTGGCCCTCCTGGATTAACATCATCTTCTATAATATCCATCAATACTGCTGTTCCATCTACAGGAATGGATTCTTCCTCAGCTGCATTACCGAGACCAAACATGCCAATTTCAGCTATTGCATCGGATCCTACTGCCCCTCTGAAAGGTTTACCCTATCCATCCATGCCTTCAATGGCTGCTCCCCCTCAGGGACTTTGGTTACAGGCCCCACAGATGAGTGGTGTCTTTAGACCCCCATATTTACAATACCCTGCTCCTTTTCCTGGCCCCTTTCCATTTCCAGCACGTGGTGTTAATCTCCCTGCTGTTCCAATACCTGATTCTCAACCTCCTGGTGTTACACCTGTGAGTGGTGGCAATGGCACTTCTACTCTTGCTTCCAGCAATCAGCTAAGGGGAACAACTGCTTTGCAAACAGAAGCTATTTCAGGGCCAGCTGATGATAAGAAGAAATTAAATGCTGTTGTCACCCAGAATGAGGATGCTGCTAATAATGATCAATTAGAGGCCTGGACTGCCCACAAGACTGAAGCAGGAATTATATACTATTATAATGCCTTGACTGGAGAATCAACATATGATAAACCTGCTGGATTTATAGGGGAGCCTCACCAAGTTTCTGCTCAGCCCACTCCAGTTTCAATGTTGCAAAGAAATCACAATTGCCAGAAGTTAAATTGCATATGGTTTCTTGCTATAGTGCTGGGAGTATTGATGGATTTGCCTGGTACTGATTGGCTGTCGGTCTCTACTAGTGATGGAAAAAAATATTACTACAACAATCGAACCAAGACTAGCTGCTGGCAAATTCCAAATGAGGTGTCTGAATTGAAAAAGAAACAAGATGGTGATGTTACAAAAGATCAGTTAATGTCAGTTCCAAATACTAATGTATTGTCTGATAGAGGGTCAGGAATGGTTACTCTGAATGCTCCTGCTATTAATACTGGTGGTCGTGATGCTGCAGCTCTTAAACCCTCTAATCTACAGAGCCCATCATCGGCTTTGGATTTGATCAAGAAGAAATTGCAGGATTCAGGAACACCTATTACTTCCTCTTCTATTCCTGTGCCATCAGTACAAACAGGATCTGAATCAAATGGTTCAAAAGCAATTGAATCTACCTCTAAGGGCATGCAAGCAGATAATAGCAAAGATAAGCAAAAAGATACTAATGGTGCTACCAATGTTTCTGATACATCTTCAGATTCTGAAGATGAAGACAGTGGGCCTTCAAAGGAGGAGTGCATCATTCAATTCAAGGTATATTCTTCTCTTTCTTTGAGTCGATGTAGTTCTTTTCTGTTGTTTTATATTATGAGGAATCTTAATCCTGCTGCCCTGATTTCATTATTGGTTGGACTAGTCAAAGGGTTAGTGCATAGCCAGATAGGGCACCAGGGATGTGGAGCATTGTGGAATGTGAGGATCCAATTGCAAGGTATGAGATCGTACATTGGAAATATGGGATTCTGGTGTGGGTTTGTAACCCTGGGTGCAAGTTTGACTGTTAGTTTTCGTGATGTGCTTGTCCCAAGGTCCCGGCCTGAACATGTGTTTTGTCTAGAAAAATTAATCTTTCCTCTCATTCATCTTACCAGGGAGATGCTCAAGGAACGCGGAGTGGCACCATTCTCAAAATGGGAGAAAGAATTGCCAAAGATAGTATTTGATCCACGTTTTAAGGCCATCCCAAGTTATTCTGCTAGAAGATCCTTGTTTGAGCATTATGTTAAAACCCGTGCTGAAGAAGAACGCAAAGAAAAGCGTGCTGCACAGAAGGCTGCAATTGAAGGATTTAAGCAATTACTGGATGAAGCCTCAGAGGATATTAACTACAATACTGATTATCAAACTTTTCGGAAGAAATGGGGAAATGATCCACGGTTTGAGGCATTGGACCGCAAGGAGCAAGAGCACCTATTGAATGAAAGATCTCCTAGCCGTGCCGAGGTGGTTTGTCATATCAAACAATTATACACATCGCTACTGCATGGAATGAGTTTTGACTACCACTATTCTGCTTTCTATGGCTTTCAGGTTGATAGTGTTAAAAGAAGGAAAATGTTAAGAGTGCTTCCTTTGAAGAAAGCTGCTGAAGAAAAGACTCAAGCAATGCGTGCAGCTGCTGCAGCCAGTTTTAAGTCAATGCTTAAAGAGCGAGGAGATATATCTTTCAACTCACGTTGGTCCAGGGTTAAAGAAAGTTTAAGGGATGACCCAAGATATAAATCTGTGAGGCATGAGGATAGGGAAGGTTTGTTCAATGAGTATTTATCTGAACTGAAAGCTGCTGAATATGCGACAGAAAGAGAGACCAAAGCTAAAAGGGAGGAGCAGGACAAGCTCAGGGAAAGAGAACGAGAGCTGCGCAAAAGGAAGGAAAGAGAAGAACAGGAAATGGAGAGAGTGCGACTAAAAATTAGAAGAAAGGAGGCAGTTACTTCTTTTCAAGCTTTACTCGTGGAGACAATCAAAGATCCTCTGGCATCATGGACGGAATCGAAACCTAAATTAGAAAAGGATCCTCAAGGACGCGCAACTAATCCTGAACTTGATTCTTCTGATACGGAAAAGTTGTTTCGGGAACACGTGAAGATGCTTCAGGAGCGATGTGCTCACGAATTTAGAGTTCTCTTAGCTGAAGTATTGACCACTGATGCTGCATCTCATGAAAATGACGATGGAAAAACAGTGCTCAATTCTTGGTCTACAGCTAAGCGAGTTCTAAAATCTGATCCAAGATATAACAAAGTTCCAAGAAAAGAAAGAGAAGCATTGTGGCGCAGGTATGCAGAGGATATGCTGCGGCGTCAAAAGGCATCTCATTCACATGATTCCAGGGAAGATAAACATACTGATGCTAAAGGTAGAAATTCTCTAGAATCTTCCAAACATCAATTGGAATCTGGGAGATCGCATGACCGAAGATAA | 3633 | 0.4297 | MASPAWLPQEAKPPVSGETSLPMASPTPNSAHATPSTGKPTPTFLLSIYRMLFLLSQFAKRLIHNATAFVAPAPATPFPHGVLQNANVSGSPQQSSTHDVSIVQSYLLLVLSLLFNGFVVIKSNSTVNPVVFQPPVPGVSSHAALSFSYNVPQGGGAFSSSQQHTQSSGKISESVAQDVTKLSSAASTPHSIPAHTSTTIMPPSDPNYRPTTSWMPTAMSFPLHPVMPTPGNPGPPGLTSSSIISINTAVPSTGMDSSSAALPRPNMPISAIASDPTAPLKGLPYPSMPSMAAPPQGLWLQAPQMSGVFRPPYLQYPAPFPGPFPFPARGVNLPAVPIPDSQPPGVTPVSGGNGTSTLASSNQLRGTTALQTEAISGPADDKKKLNAVVTQNEDAANNDQLEAWTAHKTEAGIIYYYNALTGESTYDKPAGFIGEPHQVSAQPTPVSMLQRNHNCQKLNCIWFLAIVLGVLMDLPGTDWLSVSTSDGKKYYYNNRTKTSCWQIPNEVSELKKKQDGDVTKDQLMSVPNTNVLSDRGSGMVTLNAPAINTGGRDAAALKPSNLQSPSSALDLIKKKLQDSGTPITSSSIPVPSVQTGSESNGSKAIESTSKGMQADNSKDKQKDTNGATNVSDTSSDSEDEDSGPSKEECIIQFKVYSSLSLSRCSSFLLFYIMRNLNPAALISLLVGLVKGLVHSQIGHQGCGALWNVRIQLQGMRSYIGNMGFWCGFVTLGASLTVSFRDVLVPRSRPEHVFCLEKLIFPLIHLTREMLKERGVAPFSKWEKELPKIVFDPRFKAIPSYSARRSLFEHYVKTRAEEERKEKRAAQKAAIEGFKQLLDEASEDINYNTDYQTFRKKWGNDPRFEALDRKEQEHLLNERSPSRAEVVCHIKQLYTSLLHGMSFDYHYSAFYGFQVDSVKRRKMLRVLPLKKAAEEKTQAMRAAAAASFKSMLKERGDISFNSRWSRVKESLRDDPRYKSVRHEDREGLFNEYLSELKAAEYATERETKAKREEQDKLRERERELRKRKEREEQEMERVRLKIRRKEAVTSFQALLVETIKDPLASWTESKPKLEKDPQGRATNPELDSSDTEKLFREHVKMLQERCAHEFRVLLAEVLTTDAASHENDDGKTVLNSWSTAKRVLKSDPRYNKVPRKEREALWRRYAEDMLRRQKASHSHDSREDKHTDAKGRNSLESSKHQLESGRSHDRR | 1210 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vimu5g02515 | 1210 | SUPERFAMILY | FF domain | 1036 | 1105 | IPR036517 | - | |
| Vimu5g02515 | 1210 | MobiDBLite | consensus disorder prediction | 20 | 38 | - | - | |
| Vimu5g02515 | 1210 | ProSiteProfiles | FF domain profile. | 1043 | 1100 | IPR002713 | - | |
| Vimu5g02515 | 1210 | SUPERFAMILY | FF domain | 934 | 998 | IPR036517 | - | |
| Vimu5g02515 | 1210 | Gene3D | FF domain | 767 | 821 | IPR036517 | - | |
| Vimu5g02515 | 1210 | MobiDBLite | consensus disorder prediction | 1002 | 1031 | - | - | |
| Vimu5g02515 | 1210 | Gene3D | - | 382 | 446 | - | - | |
| Vimu5g02515 | 1210 | Gene3D | - | 471 | 522 | - | - | |
| Vimu5g02515 | 1210 | ProSitePatterns | WW/rsp5/WWP domain signature. | 479 | 504 | IPR001202 | GO:0005515 | |
| Vimu5g02515 | 1210 | FunFam | Pre-mRNA-processing protein 40C | 932 | 1006 | - | - | |
| Vimu5g02515 | 1210 | ProSitePatterns | WW/rsp5/WWP domain signature. | 404 | 429 | IPR001202 | GO:0005515 | |
| Vimu5g02515 | 1210 | SUPERFAMILY | FF domain | 1102 | 1173 | IPR036517 | - | |
| Vimu5g02515 | 1210 | MobiDBLite | consensus disorder prediction | 580 | 612 | - | - | |
| Vimu5g02515 | 1210 | MobiDBLite | consensus disorder prediction | 1169 | 1210 | - | - | |
| Vimu5g02515 | 1210 | MobiDBLite | consensus disorder prediction | 1 | 38 | - | - | |
| Vimu5g02515 | 1210 | Coils | Coil | 1006 | 1047 | - | - | |
| Vimu5g02515 | 1210 | MobiDBLite | consensus disorder prediction | 1067 | 1089 | - | - | |
| Vimu5g02515 | 1210 | FunFam | Pre-mRNA-processing protein 40C | 1040 | 1100 | - | - | |
| Vimu5g02515 | 1210 | SUPERFAMILY | FF domain | 818 | 878 | IPR036517 | - | |
| Vimu5g02515 | 1210 | CDD | WW | 404 | 429 | IPR001202 | GO:0005515 | |
| Vimu5g02515 | 1210 | SUPERFAMILY | FF domain | 767 | 819 | IPR036517 | - | |
| Vimu5g02515 | 1210 | ProSiteProfiles | WW/rsp5/WWP domain profile. | 404 | 431 | IPR001202 | GO:0005515 | |
| Vimu5g02515 | 1210 | ProSiteProfiles | FF domain profile. | 826 | 881 | IPR002713 | - | |
| Vimu5g02515 | 1210 | PANTHER | TRANSCRIPTION ELONGATION REGULATOR 1 | 924 | 1207 | IPR045148 | GO:0003712|GO:0070063 | |
| Vimu5g02515 | 1210 | CDD | WW | 477 | 506 | IPR001202 | GO:0005515 | |
| Vimu5g02515 | 1210 | Pfam | WW domain | 402 | 429 | IPR001202 | GO:0005515 | |
| Vimu5g02515 | 1210 | ProSiteProfiles | FF domain profile. | 940 | 994 | IPR002713 | - | |
| Vimu5g02515 | 1210 | ProSiteProfiles | WW/rsp5/WWP domain profile. | 479 | 506 | IPR001202 | GO:0005515 | |
| Vimu5g02515 | 1210 | MobiDBLite | consensus disorder prediction | 580 | 644 | - | - | |
| Vimu5g02515 | 1210 | SUPERFAMILY | WW domain | 403 | 433 | IPR036020 | GO:0005515 | |
| Vimu5g02515 | 1210 | SUPERFAMILY | WW domain | 478 | 509 | IPR036020 | GO:0005515 | |
| Vimu5g02515 | 1210 | Gene3D | FF domain | 1040 | 1100 | IPR036517 | - | |
| Vimu5g02515 | 1210 | Gene3D | FF domain | 1101 | 1167 | IPR036517 | - | |
| Vimu5g02515 | 1210 | SMART | ww_5 | 399 | 431 | IPR001202 | GO:0005515 | |
| Vimu5g02515 | 1210 | SMART | ww_5 | 474 | 506 | IPR001202 | GO:0005515 | |
| Vimu5g02515 | 1210 | MobiDBLite | consensus disorder prediction | 156 | 210 | - | - | |
| Vimu5g02515 | 1210 | Gene3D | FF domain | 928 | 1007 | IPR036517 | - | |
| Vimu5g02515 | 1210 | Gene3D | FF domain | 822 | 884 | IPR036517 | - | |
| Vimu5g02515 | 1210 | FunFam | Pre-mRNA-processing protein 40C | 1102 | 1167 | - | - | |
| Vimu5g02515 | 1210 | Pfam | FF domain | 767 | 810 | IPR002713 | - | |
| Vimu5g02515 | 1210 | Pfam | FF domain | 943 | 991 | IPR002713 | - | |
| Vimu5g02515 | 1210 | Pfam | FF domain | 1046 | 1097 | IPR002713 | - | |
| Vimu5g02515 | 1210 | Pfam | FF domain | 829 | 876 | IPR002713 | - | |
| Vimu5g02515 | 1210 | SMART | FF_2 | 940 | 994 | IPR002713 | - | |
| Vimu5g02515 | 1210 | SMART | FF_2 | 762 | 813 | IPR002713 | - | |
| Vimu5g02515 | 1210 | SMART | FF_2 | 826 | 881 | IPR002713 | - | |
| Vimu5g02515 | 1210 | SMART | FF_2 | 1043 | 1100 | IPR002713 | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vimu5g02515 | K12824 | - | gmx:100815386 | 876.315 |