Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02513 ATGCTCCTTATCGATGATTCTACAACACGCTTCTTCCATTTCACACTTCTCTTCACTCTCTCCTTCTCTCTGTCCTTAAGAACCAGAAAGCGGTTATTCGGAAATTTCGGTTCCCGCAAATTCCGCAGAAAACGCACCGTTCGCCTCTGCGCCCTTCCTTCCGACGCTTCCAACCCGAACTGGAATTCAGAATTCGCAAAGTCCGCGCGGAGAACCGCCGCAACGTTCGTTCTCAAACGAATTTCCAGTGAACTCGACGAAGACAACAACATCAGCAACGATGTTGATGAAACCGAGCTGCACGATTTAGCTTCGCCGTCCTCATCGCCGTCCTCGTCGTCGCCGTCGGCGGCGGTTCAATTAGGTTCAAACTTCACCGGTTTCCAAGAGGATCCTATTGTTGATAAGCTGAGGACGCAGCTAGGGGTCATTCACCCGATTCCGTCGCCTCCGATTAACCGCAACGTGGTTGGCCTGTTTGTGTTCTTCTTCTTCGTTGGCGTGGTGTTCGATAAACTGTGGACTTCGCGGCGGCGGAGCAAGAGCAGCGGCGAGGATGGGCTGCGCGGCGTGTGGCCGCAGGTGCCGACGAGCTTTTCGCTGTTCCTGGAGAAGGATTTGCAGAGGAAGGAGTCCGTGGAGTGGGTGAACATGGTGCTGGGGAAGCTGTGGAAGGTGTATAGAGGTGGAATTGAGAACTGGATTATAGGGTTGCTTCAGCCTGTGATTGACAACTTGAAGAAGCCTGATTACGTTGAGAGGGTTGAGATTAAGCAGTTCTCGTTAGGAGATGAACCCTTGTCTGTTAGGAATGTTGAGCGCAGGACTTCTCGCAGGGTCAACGACTTGCAGAAGAGAGAGAACATGATAGATGGCCAGGATATTCGTGGGAGAGAATATGAGGATCCAATAGGGCTTAGGTACACAGGTGGTGCTCGCATGCTGTTGATGCTTTCTTTGAAATTTGGCATCATTCCAATTGTCGTACCTGTTGGTGTTCGAGATTTTGACATCGATGGCGAACTTTGGGTAAAATTAAGATTAATACCAACGGAACCATGGGTGGGAGCTGTTTCATGGGCTTTCGTTTCACTTCCCAAGATCAAGTTTGAACTATCTCCATTCCGTCTGTTCAATTTAATGGTATCTAACACCCGCCGGATGAAAGCTTTTCAATATCTAACACCCGCCCCCTGCCCCTCTTTATTACACAAGAGCCTATCTTGTCCTGAATTTCTGATTTTTTTTCAGAAGTTTTTGACTAAACTTCTCACTGAAGATTTACCCAAACTATTTGTACGCCCAAAGAAAATAGTTTTAGATTTCCAAAAAGGAAAAGCTGTGGGTCCAGTTGCTGCTGATGTTAAATCTGGAGAAATGCAAGGAAATAAAGATTCTGTGGGTGAACTATCTGTTACTCTGGTGGATGCTCGAAAACTTTCTTATATTTTCTACGGCAAGACAGATCCTTATGTTGTTCTTGGCCTTGGTGATCAAGTTATACGGAGCAAAAAGAATAGTCAAACAACCGTAATTGGACCCCCAGGAATGCCAATTTGGAATCAGGATTTTCATATGCTCGTTTCCAACCCTAGAAAACAGAAGTTATTCATTCAAGTAAAGGACGCTCTAGGATTTGCAGATTTGACTATTGGTACAGGAGAGGTTGATTTGGGATCTCTTAAAGACACTGTACCAACAGACAAAATTGTGGTTTTACAAGGAGGTTGGGGATTTTTAGGAAAACGCTCTTGTGGCGAGATATTACTTCGGCTAACATATAAAGCATATGTGGAGGATGAGGAAGATGATAAAACTGAGATGGGCTCCATTTATACTGATGTTTCTGATGACGAGTTGTCTGATTCGGAAGCAAATGTCACTGACGAGAGGGAGGAAAGAAATTCTTTGTACGACACAGATAAAGAGTCATTTATGGATGTTTTGGCAGCATTAATTGTGAGCGAAGAATTTCAGGGGATAGTAGCATCTGAAACAGGGTTTGGCAAAGTTTTGGATAATGGCTCAAATGCTGCGTCTAAAGTGTCAAAGTCTCCGGTTCCCAATGCTGAACCAACTCCTTCTAGTTCTGATAATTCTGAAGGCTCTGGAGGCTCTGGAGGGTCAGCCTTACTTTGGCTTGCTGTGATTACTAGCGTATCACTACTAATTTCTCTCAATGTTGGGGGATCCAATCTCTTCAATCCTTAA 2211 0.4545 MLLIDDSTTRFFHFTLLFTLSFSLSLRTRKRLFGNFGSRKFRRKRTVRLCALPSDASNPNWNSEFAKSARRTAATFVLKRISSELDEDNNISNDVDETELHDLASPSSSPSSSSPSAAVQLGSNFTGFQEDPIVDKLRTQLGVIHPIPSPPINRNVVGLFVFFFFVGVVFDKLWTSRRRSKSSGEDGLRGVWPQVPTSFSLFLEKDLQRKESVEWVNMVLGKLWKVYRGGIENWIIGLLQPVIDNLKKPDYVERVEIKQFSLGDEPLSVRNVERRTSRRVNDLQKRENMIDGQDIRGREYEDPIGLRYTGGARMLLMLSLKFGIIPIVVPVGVRDFDIDGELWVKLRLIPTEPWVGAVSWAFVSLPKIKFELSPFRLFNLMVSNTRRMKAFQYLTPAPCPSLLHKSLSCPEFLIFFQKFLTKLLTEDLPKLFVRPKKIVLDFQKGKAVGPVAADVKSGEMQGNKDSVGELSVTLVDARKLSYIFYGKTDPYVVLGLGDQVIRSKKNSQTTVIGPPGMPIWNQDFHMLVSNPRKQKLFIQVKDALGFADLTIGTGEVDLGSLKDTVPTDKIVVLQGGWGFLGKRSCGEILLRLTYKAYVEDEEDDKTEMGSIYTDVSDDELSDSEANVTDEREERNSLYDTDKESFMDVLAALIVSEEFQGIVASETGFGKVLDNGSNAASKVSKSPVPNAEPTPSSSDNSEGSGGSGGSALLWLAVITSVSLLISLNVGGSNLFNP 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02513 736 CDD SMP_SF 231 441 - -
Vimu5g02513 736 MobiDBLite consensus disorder prediction 679 704 - -
Vimu5g02513 736 Pfam C2 domain 468 566 IPR000008 -
Vimu5g02513 736 CDD C2 470 564 - -
Vimu5g02513 736 MobiDBLite consensus disorder prediction 605 638 - -
Vimu5g02513 736 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 209 443 IPR031468 GO:0008289
Vimu5g02513 736 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 468 596 IPR035892 -
Vimu5g02513 736 SMART C2_3c 469 570 IPR000008 -
Vimu5g02513 736 Gene3D C2 domain 449 597 IPR035892 -
Vimu5g02513 736 ProSiteProfiles C2 domain profile. 456 571 IPR000008 -
Vimu5g02513 736 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 42 736 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02513 - - gmx:100817508 1028.08