Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02507 ATGGCAACCCATCCTGGAAAACAAGCTCCTTCAAATGGGTCTGTCTATGTATGCAACTTGCCCTACGGGACTGACGAAAATATGTTGGCTGAATATTTTGGCACCATTGGATTAGTGAAGAAAGATAAACGTACCGGGAGACCAAAAATATGGTTATATCGAGACAAAGAGACCAATGAACCAAAAGGAGATGCTACTGTGACGTATGAAGATCCACATGCTGCTATAGCGGCTGTTGAATGGTTTAACAATAAAGATTTTCATGGCAATATAATTGGCGTTTTTATAGCAGAGTCAAAAAACAAGGATGACCAAACCTATAATTCAGCAGGAGTAGAACCAGTGGTTGCTGGTACTGTTGTTGGATTAGAGGAAATTACCAAGGATGTTAATGGTGGTAGTGGAAGAGGTAGAGGACAAAATGATCCTTCAGGCAAAGCATGGCAACAAGATGGCGATTGGTTGTGTCCGAATACAAGTTGCTCCAATGTGAACTTTGCTTTCCGTGGTGCGTGTAACCGCTGTGGAACTGCCCGTCCTGCTGGTGCTGCTGGAATTTCAGGGGCTGGTGGCCGTGGCAAGGGACGTGCTGCTGGACAAGAACCAGGGGGTGTTGGCCGGCCAGTTGGTGGAGGACTATTTGGTCCCAATGATTGGCCCTGTCCAATGTTACAACCCCAGCTCTTGAACCTCTCCTTCCTCGGTCCTTGTGGTGATTGGCTTTGTGTTTTCATAAATTTTAATTCCAGTTCTTACAGTAATGTGGGGCAACATTACATACTTCTGTGTGGCAATATCAACTGGGCGAAGCGGACTAAATGTAATATTTGCAATACAAATAAGCCTGGGCATAATGAGGGTGGTGTAAGAGGAGGACGAGGTGGAGGTTACAAAGAGCTTGATGAAGAAGAAATAGAAGAAACCAGACGTCGTAGGAGGGAAGCTGAAGATGATGGGGAGTTGTATGATGAATTTGGAAATCTAAAGAAAAAATTCCGTGCCAAAACACAGCAAGCTGAGGCTGCGCGTGGGCTTCCTGGTTCAGGACGTGCTGGTTGGGAGGTTGAAGAACTAGGTATTACTGCATATCTAGAATGCTTGCACTCCATAATTTATATTATTATAGAGCAACCTGGACCTGCACTGATAGTTTGTGAGCTAGTGAAGCTCCCACCTCCACTCTTTCCCCACATGTTCCATAACACTGATACATTTCTAGATAATCATTATAGTTACAGGTCTGATGGAATTATCATTTTCAATTAG 1266 0.4423 MATHPGKQAPSNGSVYVCNLPYGTDENMLAEYFGTIGLVKKDKRTGRPKIWLYRDKETNEPKGDATVTYEDPHAAIAAVEWFNNKDFHGNIIGVFIAESKNKDDQTYNSAGVEPVVAGTVVGLEEITKDVNGGSGRGRGQNDPSGKAWQQDGDWLCPNTSCSNVNFAFRGACNRCGTARPAGAAGISGAGGRGKGRAAGQEPGGVGRPVGGGLFGPNDWPCPMLQPQLLNLSFLGPCGDWLCVFINFNSSSYSNVGQHYILLCGNINWAKRTKCNICNTNKPGHNEGGVRGGRGGGYKELDEEEIEETRRRRREAEDDGELYDEFGNLKKKFRAKTQQAEAARGLPGSGRAGWEVEELGITAYLECLHSIIYIIIEQPGPALIVCELVKLPPPLFPHMFHNTDTFLDNHYSYRSDGIIIFN 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02507 421 ProSitePatterns Zinc finger RanBP2-type signature. 154 175 IPR001876 -
Vimu5g02507 421 MobiDBLite consensus disorder prediction 287 316 - -
Vimu5g02507 421 Coils Coil 298 318 - -
Vimu5g02507 421 ProSiteProfiles Zinc finger RanBP2 type profile. 150 181 IPR001876 -
Vimu5g02507 421 CDD RRM_SARFH 15 97 - -
Vimu5g02507 421 Pfam Zn-finger in Ran binding protein and others 151 180 IPR001876 -
Vimu5g02507 421 PANTHER ZINC FINGER RAN-BINDING DOMAIN-CONTAINING PROTEIN 2 ZRANB2-RELATED 29 107 - -
Vimu5g02507 421 FunFam TATA-binding protein-associated factor 2N isoform X1 148 182 - -
Vimu5g02507 421 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 99 IPR000504 GO:0003723
Vimu5g02507 421 SMART zf_4 238 280 IPR001876 -
Vimu5g02507 421 SMART zf_4 152 178 IPR001876 -
Vimu5g02507 421 MobiDBLite consensus disorder prediction 186 206 - -
Vimu5g02507 421 Gene3D - 147 183 - -
Vimu5g02507 421 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 15 90 IPR000504 GO:0003723
Vimu5g02507 421 SUPERFAMILY RNA-binding domain, RBD 10 102 IPR035979 GO:0003676
Vimu5g02507 421 SUPERFAMILY Ran binding protein zinc finger-like 144 182 IPR036443 -
Vimu5g02507 421 Gene3D - 214 284 - -
Vimu5g02507 421 MobiDBLite consensus disorder prediction 128 149 - -
Vimu5g02507 421 MobiDBLite consensus disorder prediction 295 316 - -
Vimu5g02507 421 Gene3D - 12 95 IPR012677 -
Vimu5g02507 421 SMART rrm1_1 14 95 IPR000504 GO:0003723
Vimu5g02507 421 FunFam HIV Tat-specific factor 1 12 96 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02507 - - gmx:100780819 531.561