Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02504 ATGCCGAAGCCTTGTGACTTGCAAATCAACATCGATGGTCAGCAGATATTTCTCTTGAAAGAGAAGGTTATTTCAAAATACTGTGGAGGGTTGAAGAAAATCTTGAATCACAGAAAGAGAAGAGGTCATGTGAAGCAGGAGTTGGGGATTAGGATCAATGATTTTCCTGGAGGACCAGAAGGGTTTGAGCTAGTTTCAATGTTCTGTTACAATAATGGAAAAATACAAATCACTGAAGCTAATGTGTGTCTTCTACACTGTTGTGCTGTTTATCTTGGAATGACTGAGGAGGTAATCAGCAACAATCTGTTGCAGCAAACAGAAACTTTTCTCCAGGGAATCTTCAACTGGAAATGGAGTGACACACTTGTGATTCTCAAGAGTTGCGAGGGGTTTTATTCATATGCAGATGGTTATGGTCTTTTGGAGAAGATCATCAGTGTCTTAGCCAAGTTTGTGCAGAATTCAGATTCAAACCTCCTCATGTCCTCACCTTCAGCATCATCATCATCTTCTTCACCAGAAACCAATTCTGCTAAAAGATTCTCTTTTTCATCCAAGAAAACTACCCCAGAAAAAATAAAGTCAACTTTGTCACGCAAGGCATGGTGGTTTGATGATTTGGCAACTTTACCACCAAATATCATTGAGAAACTTGTCCAGGCTATAGGAGCATACAAAGCTGATAACAAAGATTTAGTCCTCACAAGATTTCTGCTGCATTATCTGAAACTAGCTACTCAAACCAGAGAAGTTAATTGCAGCAACAACGGTGAATATGCTGCTCTTGCAGAAACTGCAACTTATGGAGTCATATCAGTTGGAAAAAAGACATTTTCTTGCAGAGGCCTTTTTTGGGTTTTAAGGATTGTATCAAAGTTTGGGTTGGGTAGAGATGTTAGAACAGAATTGGAGAAACTGATTGGTGGGGTGATTGAGCAAGCTACACTGGATGATCTTCTGGTTTCTGGGCATGACATGGGAGTTTATTATGATATTAATTTGGTGATAAGATTGGTCAGGGTGTTTGTTGATATGAATGGCTCTGATGATGGAATGTGTTTACAGAAACTGAAAAGGGTTGGTAGATTAATTGACAAGTATTTGAGAGAGATATCCCCTGATCAGAACCTCAAGATCTCTAAGTTTCTTGGAGTAGCAGAATGCTTGCCAGACTCAGCAAGGGATTGTTATGATGGAGTCTATAAAGCCATTGACATCTATCTTCAGTCTCATCCAATTATCACATTTGAGGAAAGATCGAGACTTTGTAGATGTCTTAATTACACCAAGCTCACCTTTGAAGCAAGTAAAGATCTGGCCAAGAACCCCAGAATACCTCCCAGGGTTGCAATGCAGGCTCTTATTTCTCAACAATCAAAAGTTCCAACAGTTGACTATGTAACTGAGAGTCCAAGAGTGAAACCTTCCCAATTAGTTTTGTACAATGAAAAAACCAGAAACAGCTTCACCAAAGAGAAGAAAGAAATGGAACTCAACATAGACAAGATGCAATGGGGAGTAATAGAACTGGCGAAATTACATAAGGAAATGAACGGTCACGTATCAAAGTTGATCATGCTTGATCCTCCTCGTACTTCATCCTCACCAAGATTTTGTTGA 1623 0.3943 MPKPCDLQINIDGQQIFLLKEKVISKYCGGLKKILNHRKRRGHVKQELGIRINDFPGGPEGFELVSMFCYNNGKIQITEANVCLLHCCAVYLGMTEEVISNNLLQQTETFLQGIFNWKWSDTLVILKSCEGFYSYADGYGLLEKIISVLAKFVQNSDSNLLMSSPSASSSSSSPETNSAKRFSFSSKKTTPEKIKSTLSRKAWWFDDLATLPPNIIEKLVQAIGAYKADNKDLVLTRFLLHYLKLATQTREVNCSNNGEYAALAETATYGVISVGKKTFSCRGLFWVLRIVSKFGLGRDVRTELEKLIGGVIEQATLDDLLVSGHDMGVYYDINLVIRLVRVFVDMNGSDDGMCLQKLKRVGRLIDKYLREISPDQNLKISKFLGVAECLPDSARDCYDGVYKAIDIYLQSHPIITFEERSRLCRCLNYTKLTFEASKDLAKNPRIPPRVAMQALISQQSKVPTVDYVTESPRVKPSQLVLYNEKTRNSFTKEKKEMELNIDKMQWGVIELAKLHKEMNGHVSKLIMLDPPRTSSSPRFC 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02504 540 MobiDBLite consensus disorder prediction 164 184 - -
Vimu5g02504 540 ProSiteProfiles NPH3 domain profile. 202 461 IPR027356 -
Vimu5g02504 540 Pfam NPH3 family 203 437 IPR027356 -
Vimu5g02504 540 PANTHER OS12G0117600 PROTEIN 4 513 IPR043454 -
Vimu5g02504 540 SUPERFAMILY POZ domain 3 96 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02504 Vimu-Chr5 35419732 35422421 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02504 6 465 EF-hand Containing Proteins AT3G44820 27.451 1.31e-49 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02504 - - gmx:100808259 879.011