Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02501 ATGGGACAGTTATTTTCTCTTGAAGAAACAACTGATGAGTTACGGGATCGATGCCAGAAACTATATAATGGGTGTAAGAAGTTTATGACAGCTTTGGGGGAAGCATATAATGGAGAAGTAACCTTTGCTGATTCATTAGAAGCATTTGGTGGTGGCCAAGACGACCCTGTTAGTGTATCAATAGGAGGTCCTGTCATAACTAAGTTTATTACCACATTGCGCGAGCTAGCTTCTTTCAAAGAGCTTCTTCGTTCACAGGTAGAGCATGTGTTGATTGACCGGCTGACGGAGTTTATGAACATTGATTTGCAAGATACAAAGGATTCTCGTCGTCGTTATGACAAAGCTGTCCAATCTTATGATCAGTGTCAAAGTGATAATTCTTTTCCTTTTGTGATGCCTGACTATGTTTATCCGTGA 420 0.4048 MGQLFSLEETTDELRDRCQKLYNGCKKFMTALGEAYNGEVTFADSLEAFGGGQDDPVSVSIGGPVITKFITTLRELASFKELLRSQVEHVLIDRLTEFMNIDLQDTKDSRRRYDKAVQSYDQCQSDNSFPFVMPDYVYP 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02501 139 Gene3D Arfaptin homology (AH) domain/BAR domain 2 128 IPR027267 -
Vimu5g02501 139 Pfam BAR domain of APPL family 6 126 IPR004148 GO:0005515|GO:0005737
Vimu5g02501 139 SUPERFAMILY BAR/IMD domain-like 3 126 IPR027267 -
Vimu5g02501 139 PANTHER CENTAURIN/ARF 3 125 IPR045258 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02501 Vimu-Chr5 35402231 35405122 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02501 K12489 - gmx:100796006 221.476