Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02494 ATGTCTAAAACAAAACCCATGAATCTCATATTTCTGTTTTGTGCTTTCCTTCTCGCAGGTTTTGAAGTCGATGCATTATCCTATGATTATTCTGCAAGTATTGAATGTCTTACACAACCATTGAAGCCTCAATACAATGGAGGAATAATCCGAAACCCAGATCTAAATAATGGACTTGAAGGATGGAATTCATTTGGGGATGCAAAAATAGAACACAGAGAATCATCAGGCAACAAATATGTGGTAGCACATAGCAGAAAACATGCACATGACAGTGTCTCTCAAAAGATTTCTATCGAAAAGGGAAAACATTATACTTTGTCTGCTTGGATACAAGTAAGTGCAGGGAATGTCCCTGTAACTGCAATTGCGAAAACAAGCAAAAATTACAACTTTGCTGGTGCCATTTTTGCTGAGAGTAAGTGTTGGTCTATGCTTAAGGGTGGTTTCACAGCTCAAGATTCAGGACCAGCAGAGCTCTATTTTGAGGGCAACAATACCTCTGTCGAAATATGGTTAGACAACGTTTCCTTACAACCATTCACAGATAAAGAATGGAGTTCTCATCAAGATCAGAGCATTGAGCAGAATCGTAAGAGGAAGGTATCAATCCGAGCACACGATGAACAAGGAAAGCCATTAGCAAATGCAGAGATATCATTTCAAATGAAGAAGGCAAGTTTTCCGTTTGGGAGTTCGATGAATAAATACATCCTAAACAATGCATTATACCAAAACTGGTTTGCCTCTAGATTCACAGTGACAGCGTTTGAAAACGAAATGAAATGGTACAGCACTGAAAGTGTGCAAGGTAAGGAAGACTACACGGTTGCCGACGCTATGTTGCAGTTTGCCAAGAGCCACAACATAGATGTTCGAGGCCACAACGTATTCTGGGATGATCCTAATTTCCAACCTGGTTGGGTTCCTTCACTGTCTCCAACCCAACTATCTTCTGCAACAGAAAAGAGGCTCAACTCTGTCGTGTCAAAATACAAGGGCAAGGTTATTGCATGGGATGTTGTTAACGAAAATCTACACTTTTCGTTCTTCGAAAGTAAACATGGACCAGACTTTTCCAGCAAAATTTTCGAGGAGGTTCATAATGTCGATGCAGGAACCACTTTGTTTCTGAACGAGTATAACACCATTGAGGACAATAAAGATACTGTTGCAAGCCCAGCAAGGTACGTCCAGAAGATTAAACAAATTCAGAGTTATAAAAAGAATAGCAGAATCGCTTTGGGAATTGGGTTGGAGTCCCACTTCGGTGATAAGGGTATTAATTTTCCATACGTCAGATCATCTTTAGATTTTCTTGGTGCCACTCGTTTGCCCATTTGGATTACAGAATTTGATGTTGCAAATCAACCTAGACAGGTACAATACTTTCAGCTTGGTCTTAAAGAGCTACATAGTCACCCTATGGTTAAAGGTATTGTGATGTGGACAGCATTGTCACCACAAGGTTGCTACAGAATTTGCTTAACAGATAACAATTTCAAGAACTTACCAGCAGGGAACGTTGTGGACAGATTTATTTCTCAGTGGAAACCACAGAATTTGTCTGGAGTTACAGATAAAAATGGATACCTTGAACTCTCTCTTTTTCATGGTGATTACGAAATGAAGATAAGTCACCCTGTCAAAAACAATAACACTTTCACACAATTCCTAAAAGTATCTCCCCAAAATCAATCTAACAAAATAAAACAATTTGTAAAGCTTTATGTGAAGTAA 1740 0.3908 MSKTKPMNLIFLFCAFLLAGFEVDALSYDYSASIECLTQPLKPQYNGGIIRNPDLNNGLEGWNSFGDAKIEHRESSGNKYVVAHSRKHAHDSVSQKISIEKGKHYTLSAWIQVSAGNVPVTAIAKTSKNYNFAGAIFAESKCWSMLKGGFTAQDSGPAELYFEGNNTSVEIWLDNVSLQPFTDKEWSSHQDQSIEQNRKRKVSIRAHDEQGKPLANAEISFQMKKASFPFGSSMNKYILNNALYQNWFASRFTVTAFENEMKWYSTESVQGKEDYTVADAMLQFAKSHNIDVRGHNVFWDDPNFQPGWVPSLSPTQLSSATEKRLNSVVSKYKGKVIAWDVVNENLHFSFFESKHGPDFSSKIFEEVHNVDAGTTLFLNEYNTIEDNKDTVASPARYVQKIKQIQSYKKNSRIALGIGLESHFGDKGINFPYVRSSLDFLGATRLPIWITEFDVANQPRQVQYFQLGLKELHSHPMVKGIVMWTALSPQGCYRICLTDNNFKNLPAGNVVDRFISQWKPQNLSGVTDKNGYLELSLFHGDYEMKISHPVKNNNTFTQFLKVSPQNQSNKIKQFVKLYVK 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02494 579 SUPERFAMILY Galactose-binding domain-like 46 179 IPR008979 -
Vimu5g02494 579 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 217 513 IPR001000 GO:0004553|GO:0005975
Vimu5g02494 579 PANTHER GLYCOSYL HYDROLASE 27 568 IPR044846 GO:0004553|GO:0005975
Vimu5g02494 579 Pfam Carbohydrate binding domain 48 164 IPR003305 GO:0016798
Vimu5g02494 579 SMART glyco_10 261 513 IPR001000 GO:0004553|GO:0005975
Vimu5g02494 579 Gene3D Glycosidases 216 524 - -
Vimu5g02494 579 Gene3D - 38 181 - -
Vimu5g02494 579 Pfam Glycosyl hydrolase family 10 223 483 IPR001000 GO:0004553|GO:0005975
Vimu5g02494 579 SUPERFAMILY (Trans)glycosidases 212 519 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02494 Vimu-Chr5 35352233 35355132 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02494 22 569 Glycoside Hydrolase AT4G33840 56.443 0.0 657
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02494 - - gmx:100775272 882.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02494 5 35352233 35355132 Vimu5g02494 5 35352233 35355132 ECH