Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02490 ATGCCAATGCCATCTCCCTCGTTCTCAACCCGGAAATCCCCCCCCAACATCTGCATCGTCAAACCCCTTTTCTCCAACACTTCCCTATCCGACGCCGTTTCTTCTCTCGACCTATTGCGCCTCAAGGGCATTCGCTTACCCTCTCACATTCTCGCCACCCTCTTGCGCCACTGCTCCAAAACCAGGTCTTTTCGAGAGGGCAAGTTGATTCACCTCCACTTGAAGCTCACCGGCTTCAAACGCCCCCCAACACTTCTAGCCAACCACTTGATCGCTATGTACTTCAGCTGCGGCGATTTCGTTCAGGCACGCCAGGTGTTCGACAAAATGGACGATAGAAATTTGTTTACTTGGAACAATATGCTTTCTGGGTATGCTAAATTGGGTATGATGAAGCAGGCTAGGAGCATATTCTATCGAATGCCTCATAAGGATTATGTGTCTTGGAATTCAATGGTGTCTGGGTATGCGCATCGTGGCAGATTTGACGAGGCTTTGAGATTTTATCGACGGTTTAGAAGATTGGATGTGGGGTATAACGAGTTTAGTTTTGCCAGTGTCTTGATTGTTTCTGTAAAGTTGAAGGAATTTGAACTTTGTAGGCAGATCCATGGGCAGGTTTTAGTAGTTGGGTTTTTGTCCAATGTGGTTATATCCAGCTTAATTATTGATGCTTATGCAAAATGTGGAAAGATGGAAGATGCAAGAAGATTATTTCATGACATGCCTGCGAGGGATGTTCGTGCATGGACAACACTAGTTACGGCTTATGCCGCATGGGGGGACATCGAATCGAGCGCCGAGTTGTTTAGTCAGATGCCTAAAAGCAACCCCTGTTCGTGGACATCTTTGATTAGAGGTTACTCTAGAAATGGTATGGGTCATGAAGCACTTGGTGTGTTTAGAGAGATGATCAAGCACCAAGTTAGACCTGATCAATTTACGTTCAGTACTTGCCTATTAGCTTGTGCTACTATTGCTTCTCTGAAGCATGGTAAACAAATACATGCGTTTTTGGTGCGAAATAGCATCAAACCTAACACTGTTGTAATTAGTGCTATTGTTGGCATGTATTTGAAGTGTGGAAGGTTGGAAACTGCCAGGCGAGTCTTTAATTCCACTGGAAATAAGCAGGATGTAGAGTTGTGGAACACGATTTTATCAACACTGGCCCACTATGGCTATGTCACAGAAGCAATTATGATGCTTTATAATATGCTAAGATCAGGAGTGAAGCCAAATAGGACCACTTTTGCCGTCATTTTGAATGCTTCTTGTCATTCAGGTCTTGTACAGGAAGGGCTTCAGTTATTCAAGTCCATGCCTAGTGAGCATGGTGTCGTCCCTGACCAACAGCAGTACGCAGGCTTAACTAATCTTTTTCATGAAGCTGGGTGTTTTAATAAACCAGTGAAGGATCTGCAGATGATGGATTCTAAGCCAGATGACCATGTTGTATGTCGATTGCGTGGGAATATAGATCACGGGAGAGAAGTCGCTGTACTGCTTATCAAATTGCAGCCACAATCCTTTGAAACCTACAAATTACTTTCAAGTATTTATGCTGCACTTGGGAAATGGGATTTGGTTGAGAAAATAAGACATATTTGTCGTGAGAGACAGGGGAGAAAAGAGCAGCAACAGCGAAAGAAAGAGGAAGAAGAACTAGGAATTCGTCTTCCTTTTGCTGTTGTTGTTGTCTCTAAACAAGTTGAGAAAAGAAAAGCAATCGAAAGAGAGGAAAAAAGTCTGTCTGATCTCAAAAACTCTGGGGAAGACTACCCTGGCTCAAATTACCATCCATCTGACAGAAAAAATTGGATGTCCGAACTCGACCCAGAGAAACTTGTGATAAAACAAATTGTTTGGCCTGGAACCCATGATTCTGCAACCAACAAGATTGGCATCCCATGCATCACTCGCCCTTTTGCTCAATGCCAATCCTTGTCCGTCTACCATCAGCTTTTGATGGGGACAAGGGTCGTTGACATTCGGGTGCAAGAGGATCGCAGAGTATGCCACGGAATCCTCGTTACATACAGCATCGACGTTGTCATCAAAGATGTCAAGAAGTTCTTATCAGAAACCCAATCGGAAATCATCATCCTTGAGGTTAGAACCGAGTTTGGGCACGAGGATCCTCCCGAATTCGACAAGTACCTTGAGGAACAACTGGGGGATTACCTAGTTCTCCAGGATGATAACGTTTTTGAAAAGACCATAGCCGAGGTGTTACCAAAGAGAGTTATTTGCGTTTGGAAGCCAAGCAAATCGCCACAGCCTCCAGCAGGAAGTCCTCTATGGAGTGCAGGGTATCTGAGGGATAACTGGATCAACACTGACATGCCATCAACCAAGTTTGAGAGCAACATGAAGCATCTCAGCGAACAGCAATCTGTCACGTCCCGAAAATACTTTTACAGAGTGGAGAACACCGTCACTCCTGTGGCGGATAACCCCGTTGTGTGTGTGAAGCCTGTCACGGAACGCATTCATGGCTTTGCAAGACTCTTCATTAGTCAGTGCTTTTCCAAAGGGTATGCAGATAGATTGCAGGTATTTTCCACGGATTTCATCGACCATGATTTCGTTGATGCATGCGTTGGACTCACACGTGCGAGGGTAGAGGGTCAAGCATGA 2640 0.4477 MPMPSPSFSTRKSPPNICIVKPLFSNTSLSDAVSSLDLLRLKGIRLPSHILATLLRHCSKTRSFREGKLIHLHLKLTGFKRPPTLLANHLIAMYFSCGDFVQARQVFDKMDDRNLFTWNNMLSGYAKLGMMKQARSIFYRMPHKDYVSWNSMVSGYAHRGRFDEALRFYRRFRRLDVGYNEFSFASVLIVSVKLKEFELCRQIHGQVLVVGFLSNVVISSLIIDAYAKCGKMEDARRLFHDMPARDVRAWTTLVTAYAAWGDIESSAELFSQMPKSNPCSWTSLIRGYSRNGMGHEALGVFREMIKHQVRPDQFTFSTCLLACATIASLKHGKQIHAFLVRNSIKPNTVVISAIVGMYLKCGRLETARRVFNSTGNKQDVELWNTILSTLAHYGYVTEAIMMLYNMLRSGVKPNRTTFAVILNASCHSGLVQEGLQLFKSMPSEHGVVPDQQQYAGLTNLFHEAGCFNKPVKDLQMMDSKPDDHVVCRLRGNIDHGREVAVLLIKLQPQSFETYKLLSSIYAALGKWDLVEKIRHICRERQGRKEQQQRKKEEEELGIRLPFAVVVVSKQVEKRKAIEREEKSLSDLKNSGEDYPGSNYHPSDRKNWMSELDPEKLVIKQIVWPGTHDSATNKIGIPCITRPFAQCQSLSVYHQLLMGTRVVDIRVQEDRRVCHGILVTYSIDVVIKDVKKFLSETQSEIIILEVRTEFGHEDPPEFDKYLEEQLGDYLVLQDDNVFEKTIAEVLPKRVICVWKPSKSPQPPAGSPLWSAGYLRDNWINTDMPSTKFESNMKHLSEQQSVTSRKYFYRVENTVTPVADNPVVCVKPVTERIHGFARLFISQCFSKGYADRLQVFSTDFIDHDFVDACVGLTRARVEGQA 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02490 879 Pfam PPR repeat 116 144 IPR002885 -
Vimu5g02490 879 Pfam PPR repeat 88 114 IPR002885 -
Vimu5g02490 879 Pfam PPR repeat 220 245 IPR002885 -
Vimu5g02490 879 Pfam PPR repeat 249 276 IPR002885 -
Vimu5g02490 879 Pfam PPR repeat 147 175 IPR002885 -
Vimu5g02490 879 CDD PI-PLCXDc_plant 594 874 - -
Vimu5g02490 879 FunFam Pentatricopeptide repeat-containing protein At2g21090 18 172 - -
Vimu5g02490 879 Gene3D Phosphatidylinositol (PI) phosphodiesterase 603 871 IPR017946 GO:0006629|GO:0008081
Vimu5g02490 879 Gene3D Tetratricopeptide repeat domain 327 495 IPR011990 GO:0005515
Vimu5g02490 879 Gene3D Tetratricopeptide repeat domain 190 326 IPR011990 GO:0005515
Vimu5g02490 879 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 277 311 IPR002885 -
Vimu5g02490 879 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 414 449 IPR002885 -
Vimu5g02490 879 FunFam pentatricopeptide repeat-containing protein At2g33680 351 549 - -
Vimu5g02490 879 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 215 249 IPR002885 -
Vimu5g02490 879 SUPERFAMILY TPR-like 93 283 IPR011990 GO:0005515
Vimu5g02490 879 MobiDBLite consensus disorder prediction 586 605 - -
Vimu5g02490 879 FunFam Pentatricopeptide repeat-containing protein At2g21090 189 328 - -
Vimu5g02490 879 Pfam Phosphatidylinositol-specific phospholipase C, X domain 643 735 IPR000909 -
Vimu5g02490 879 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 114 148 IPR002885 -
Vimu5g02490 879 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 618 746 - -
Vimu5g02490 879 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 24 141 IPR046960 GO:0003723|GO:0009451
Vimu5g02490 879 Pfam PPR repeat family 279 324 IPR002885 -
Vimu5g02490 879 Pfam PPR repeat family 379 427 IPR002885 -
Vimu5g02490 879 NCBIfam pentatricopeptide repeat 116 145 IPR002885 -
Vimu5g02490 879 NCBIfam pentatricopeptide repeat 417 450 IPR002885 -
Vimu5g02490 879 NCBIfam pentatricopeptide repeat 222 247 IPR002885 -
Vimu5g02490 879 NCBIfam pentatricopeptide repeat 280 312 IPR002885 -
Vimu5g02490 879 NCBIfam pentatricopeptide repeat 147 177 IPR002885 -
Vimu5g02490 879 NCBIfam pentatricopeptide repeat 382 414 IPR002885 -
Vimu5g02490 879 Gene3D Tetratricopeptide repeat domain 21 178 IPR011990 GO:0005515
Vimu5g02490 879 SMART plcx_3 612 754 IPR000909 -
Vimu5g02490 879 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 379 413 IPR002885 -
Vimu5g02490 879 SUPERFAMILY PLC-like phosphodiesterases 603 870 IPR017946 GO:0006629|GO:0008081
Vimu5g02490 879 SUPERFAMILY TPR-like 223 524 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02490 Vimu-Chr5 35311113 35315054 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02490 567 879 Acyl Lipid Metabolism Gene Families AT4G38690 72.611 1.49e-171 498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02490 - - vun:114168828 990.334