Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02477 ATGTTTCAACAAAATTCATTCTACCCACAAGTCGATTTGACAAATCCAGAAGCTGTTTCTCCCTTTTCCCAGCGTTCATCGTCATCTTCTTCTTCCATTTATCCTACAGTAGAAACAGAGAATCTCGTTGCGGAAGAGCCAAACACGACACAAGCCATGGAAAACGTTCTCGTCACGGTTCCGGGTGCGATTCTGCATCTCATAGAAAAGGATTCAAGCGTGCACCTCGCTTCAGGGGATCTCACCATATCCAGCCTCGGAGAAGGGGACAAAGTGGTGGCTGTTCTCGCTCGCGTCGGAGACGAGGTTCAGTGGCCGTTGGCCAAGGACGTGGCGGCGGTGAAGCTGGACCAGTCGCACTACTTCTTCACGCTGCAAGTTCCACAGAAACAGGCGGAGAACGGATTTGAGGTGCTGAATTATGGGTTGACGGTGGCGGCGAAGGGGCAGGAGAAGGTGCTGAAGGAACTGGACAGGGTTCTGGAGAAGTATAGCTTTCTGTCGAAGGAGAAAGTGAAGGGTGTGAGTGGATGGGAGGTGTTGGATGGTTCTGTGTCAACAGAGACATCACCTGAAGAATTAAAATCAGAGGAGAAGAGGGAAGTGATCGAGGAGCGTTCTGGTGCTTATTGGACAACGTTGGCTCCGAACGTGGAGGATTACAGTGGGAGTTTTGCGAGGTGGATTGCGGCGGGGTCGGGGCATGTTATTAGGGGGATTTTGTGGGCTGGGGATGTTACCGTGGAGAGGTTGAAGTGGGGGAATGATTTCATGAAGAAGAGATTGGAGGCTGGTTCCCACTCCCAGATTAGTCCTCAGACATTGGAGAATATGAAAAGGGTCAAGAAGTTGACAAAGATGTCAGAGAAAGTAGCCACTGGTGTCCTCTCAGGGGTTGTCAAAGTGTCTGGATTCTTCACAAGTTCTGTAGTCAACTCCAAACCTGGAAAGAAGTTCTTTAGTCTTCTTCCTGGAGAAATCGTCCTTGCTACCATGGATGGATTCAATAAGGTGCTGGATGCTGTAGAAGTATCTGGGAGGAATGTTATGTCCACTTCGTCATCCGTGACCACTGAACTCGTTTCACATAAGTATGGAGAGCAAGCGGCCCAGGTTGCTAATGAAGGTCTTGACGCCGCAGGGCATGCAATTGGGACAGCTTGGGCAGTGTTCAAACTTAGGAAGGCACTCAACCCTAAGAGTGTGATCAAGCCAACAACACTGGCCAAAGCTGCTGCCGAAGCAAATTCTGCCAAACTCAAGGCTAAGAAATGA 1275 0.4973 MFQQNSFYPQVDLTNPEAVSPFSQRSSSSSSSIYPTVETENLVAEEPNTTQAMENVLVTVPGAILHLIEKDSSVHLASGDLTISSLGEGDKVVAVLARVGDEVQWPLAKDVAAVKLDQSHYFFTLQVPQKQAENGFEVLNYGLTVAAKGQEKVLKELDRVLEKYSFLSKEKVKGVSGWEVLDGSVSTETSPEELKSEEKREVIEERSGAYWTTLAPNVEDYSGSFARWIAAGSGHVIRGILWAGDVTVERLKWGNDFMKKRLEAGSHSQISPQTLENMKRVKKLTKMSEKVATGVLSGVVKVSGFFTSSVVNSKPGKKFFSLLPGEIVLATMDGFNKVLDAVEVSGRNVMSTSSSVTTELVSHKYGEQAAQVANEGLDAAGHAIGTAWAVFKLRKALNPKSVIKPTTLAKAAAEANSAKLKAKK 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02477 424 PANTHER SPARTIN 26 421 IPR045036 -
Vimu5g02477 424 Pfam Senescence domain 227 413 IPR009686 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02477 Vimu-Chr5 35211425 35213000 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02477 K19366 - gmx:100802385 661.373