Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02472 ATGGGTTTCTTTAGTGCCATTTTGGGGTTTTTTGGATTCGGGGTTGGGATTTCGATTGGCCTTGTGGCTGGCTATTTTCTCTTCATCTACTTTCAACCCACTAATGTTGAGGATCCTGAAATCAAACCAATGGTGGAGCAAGAGCAAGAGACTTTGCAGCAGATGTTTCCGGAGATTCCTGTCTGGATAAAAAGTCCGGATTTCGATCGGGCAATTTGCAAGACTGCCAGGAACATTGCAAAACCCATAATTGCTGAGCAGATTCCTAAATATAAAATTGACTCTGTTGAGTTTGAAACACTCACTCTGGGTTCGCTGCCGCCAACTTTTCAAGGAATGAAAGTTTATGTGACTGATGAGAAGGAGTTAATTATGGAGCCTTCTGTAAAATGGGCTGGAAATCCTAATGTTACTGTCTCTGTTAAGGCATTTGGGTTGAAAGCAACTGTGCAGGTTGTAGATTTGCAAGCTTTCCTATTGCCTCGCATTACTTTGAAGCCTTTGGTTCCTAGTTTTCCTTGCTTTGCCAACATATATGTCTCCCTCATGGAAAAGCCACATGTTGACTTTGGGCTAAAGCTCATAGGGGCTGATCTTATGTCTATTCCAGGTGTCTATAGGATCGTTCAGGACATTATCAAAGATCAGGTTGCAAACATGTATTTATGGCCCAAAACCTTGGAAGTTCCAGTTTTAGATATGTCAAAAGCCTTGAAGAGGCCTGTTGGAATTTTACATGTAAAGGTTCTTCAGGCAATGAAGCTAAAGAAAAAAGATCTTCTTGGTGCATCTGACCCCTATGTAAAGCTAAAGCTTACTGATGATAAATTGCCATCGAAAAAGACTACTGTGAAGCACAAGAACTTAAATCCTGAATGGAATGAAGAATTCAATATGATAGTTAAAGATCCTGACTCCCAGGTTTTAGAGGTTAATGTTTATGACTGGGAGCAGGTTGGGAAACATGATAAGATGGGTATGAATGTGATATCTTTAAAAGAAGTTTCCCCCGAAGAGCCTAAACGTTTTACTCTTGACCTCCTAAAAAACATGGATCCCAATGATGTCCAAAATGAGAAGTCACGTGGGCAGATTGTTTTAGAACTGACATATAAACCCTTCAAGGAGGAGGATTTGGCCAAGGGGTTTGAAGAGACGCAGACAGTGCCAAAAGCTCCTGAAGGTACTCCAGAAGGTGGAGGTTTGCTTGTAGTTATAGTCCATGAAGCTCAAGATGTCGAAGGGAAGTATCACACTAATCCACATGTACGACTTATATTCAGAGGGGAAGAGAAAAAAACAAAGCGCATTAAAAAGAATAGGGATCCAAGATGGGAAGATGAGTTCCATTTTATGGTAGATGAGCCTCCCACCAATGATAGATTACACGTGGAGGTTCTCAGCACTTCATCACGAAACCTGCTCCACCAAAAGGAATCACTGGGTTATATCGACATCAATCTTGGGGATGTTGTTGCCAACAAAAGAATTAATGAGAGGTACCATCTCATAGACTCCAAGAATGGTCGCCTGCAGGTAGAGTTGCAGTGGAGAACCTCACAGGCAGGATGA 1572 0.4173 MGFFSAILGFFGFGVGISIGLVAGYFLFIYFQPTNVEDPEIKPMVEQEQETLQQMFPEIPVWIKSPDFDRAICKTARNIAKPIIAEQIPKYKIDSVEFETLTLGSLPPTFQGMKVYVTDEKELIMEPSVKWAGNPNVTVSVKAFGLKATVQVVDLQAFLLPRITLKPLVPSFPCFANIYVSLMEKPHVDFGLKLIGADLMSIPGVYRIVQDIIKDQVANMYLWPKTLEVPVLDMSKALKRPVGILHVKVLQAMKLKKKDLLGASDPYVKLKLTDDKLPSKKTTVKHKNLNPEWNEEFNMIVKDPDSQVLEVNVYDWEQVGKHDKMGMNVISLKEVSPEEPKRFTLDLLKNMDPNDVQNEKSRGQIVLELTYKPFKEEDLAKGFEETQTVPKAPEGTPEGGGLLVVIVHEAQDVEGKYHTNPHVRLIFRGEEKKTKRIKKNRDPRWEDEFHFMVDEPPTNDRLHVEVLSTSSRNLLHQKESLGYIDINLGDVVANKRINERYHLIDSKNGRLQVELQWRTSQAG 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02472 523 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 401 519 IPR035892 -
Vimu5g02472 523 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 55 232 IPR031468 GO:0008289
Vimu5g02472 523 FunFam Extended synaptotagmin-2 402 519 - -
Vimu5g02472 523 ProSiteProfiles C2 domain profile. 223 345 IPR000008 -
Vimu5g02472 523 FunFam Synaptotagmin-2 isoform A 238 393 - -
Vimu5g02472 523 CDD C2 245 347 - -
Vimu5g02472 523 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 74 231 IPR039010 -
Vimu5g02472 523 ProSiteProfiles C2 domain profile. 382 501 IPR000008 -
Vimu5g02472 523 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 517 IPR045050 GO:0008289
Vimu5g02472 523 CDD SMP_SYT 60 231 - -
Vimu5g02472 523 Gene3D C2 domain 239 393 IPR035892 -
Vimu5g02472 523 Gene3D C2 domain 402 520 IPR035892 -
Vimu5g02472 523 Pfam C2 domain 243 342 IPR000008 -
Vimu5g02472 523 Pfam C2 domain 402 503 IPR000008 -
Vimu5g02472 523 PRINTS C2 domain signature 309 317 IPR000008 -
Vimu5g02472 523 PRINTS C2 domain signature 260 272 IPR000008 -
Vimu5g02472 523 PRINTS C2 domain signature 287 300 IPR000008 -
Vimu5g02472 523 SMART C2_3c 402 500 IPR000008 -
Vimu5g02472 523 SMART C2_3c 244 344 IPR000008 -
Vimu5g02472 523 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 238 376 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02472 Vimu-Chr5 35176153 35182471 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02472 238 510 Lipid Metabolism Gene Families AT3G61300 27.931 6.60e-14 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02472 - - gmx:100781189 990.334