Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02471 ATGGAAACACGGAGCCGGAAGCGGGCGGAGGCTTCCTCAGCTGCCCCTTCATCCCCTTCCTCTGGTCCCACTACCCGTTCCAGCAAGCGTGCGCGTCTCTCTTCTTCTTCCTCTGCTTCCGCCGCCGCAACTGCCACCGCATCTATTTCTTCTGTTAACACTCGCTCCCGTGCATCAAGAACTAAGGAACAACCCTTACCTCCGAAGAATCCTCCTCCCATGGACTCTGCCAATGAATCATCTGGTTCCCGACGTGATCGCCGCAGCAAGGACAACTCCGACAAGGGTAAGGAAAAAGAACACGATGTTAGGATTAGGGACAGAGATGCTGACAGAGGGCTGGCATTGAACATGGATGGTGGTGCAGAAGACGATGATAATGACAGTGAAGGTGGTGTGGGGATTTTGCATCAAAATTTGACCTCTGCCAGTAGTGCACTTCAGGGGCTGCTTCGAAAGCTTGGTGCTGGGTTGGATGATCTGCTCCCATCTTCTGCCATGGGTTCTGCGTCTTCCTCTCATCAGAACGGGAGGCTGAAAAAGATCCTTTTTGGGTTGCGAGCGGAGGGCGAAGAAGGGCGGCAGGTTGAAGCGTTGACGCAACTCTGTGAAATGCTTTCAATTGGGACTGAAGAATCGCTTAGTACATTCTCAGTTGATTCGTTTGTTCCTGTGCTTGTGGGTTTGTTGAATCACGAGAACAATCCCGACATCATGCTTCTTGCTGCAAGAGCATTAACCCATCTCTGCGACGTGCTACCTTCATCTTGTGCTGCGGTTGTTCATTATGGTGCAGTTTCAATTTTCTGTGCGAGGTTGCTCACCATAGAATACATGGACTTGGCTGAGCAGTCCCTTCAAGCTCTGAAGAAGATATCTCAGGAGCATCCCACTGCCTGCCTACGAGCAGGTGCTCTTATGGCCGTGCTTTCTTATTTGGACTTCTTTTCTACAGGAGTTCAGCGGGTTGCATTGTCTACTGCTGCAAATATGTGCAAGAAACTTCCTTCAGATGCGTCTGATTTTGTGATGGAAGCTGTTCCTCTTCTTACAAACCTTCTTCATTACCATGATGCCAAGGTTCTAGAGCATGCCTCTGTTTGTTTGACTCGAATAGCTGAAGCGTTTGCGTCATCGCCTGACAAATTAGATGAATTGTGCAACCATGGACTGGTAACACAAGCTGCCTCCCTCATCTCTAACAGCAGTTCTGGAGGTGGTCAGGCTTCTCTCAGCACACCGACATATACTGGTTTAATCCGACTTCTTTCAACTTGTGCGAGTGGATCGCCTCTTGGAGCTAAAACTTTACTACTACTCGGAATTAGTGGTATTCTCAAAGATATTCTATCTGGTTCTGGAGTTTCTTCCAATGCCTCTGTTTCACCTGCATTAAGTAGGCCCCCAGAGCAGATATTTGAGATTGTAAACCTGGCAAATGAGCTTCTTCCCCCATTGCCACAAGGAACAATTTCTCTCCCTATCATCTCCAACATGTTTATGAAAGGGCCCATTATAAGGAAGTCTCCCGCTGGTAGCTCTGGGAAACAAGAAGATTCAAATGGAAATGTTACTGAGATATCAGCCCGTGAGAAACTATTAAATGACCAGCCTGAACTTCTTAAGCAATTTGCTATGGATCTTCTACCAGTTTTAATACAGATATATGGTTCTAGTGTCAATGGTCCTGTTCGGCACAAATGTCTTTCTGTCATTGGAAAATTGATGTATTTCAGCACAGCAGAGATGATCCAGTCTTTGTTGAGTGTGACCAATATATCAAGTTTCTTAGCTGGGGTCCTAGCATGGAAAGATCCACATGTGTTGGTTCCTGCCTTGAAAATTGCTGAAATTCTAATGGAAAAGCTTCCTGGGACATTCTCCAAGATGTTCATTAGAGAAGGTGTTGTGCATGCAGTGGACCAACTTATTTTACCCACAAATTCAACCAATATCTCTACTCAGGCATCTTCTGCTGAGAAGGATAATGATTCTATATCTGGAGCATCATCTCGCTCTAGGCGTTATCGGCGACGCAGTGGAAGCTCCAATCCTGATGGGAATCCTTTGGATGATTTGAAGGCTCCTGTTTCAGTGAATGTTGGCTCACCTCCAAGTTCTGTGGATATTCCAACAGTAAATTCCAGTATTCGGATGTCTGTTAGTGCAGCGGCAAAGGCTTTTAAAGATAAGTACTTTCCTTCTGACGCTGGGGCATCTGAAGTGGGTATTACTGATGATCTTTTGAATCTGAAAAATCTCTGCATGAAGCTAAATACTGATGCGGATGAAGAAAGAACCAATGGAAAGGGGAAATCTAAATCTTCTGGATTTGTTCTAGAAGAGTATTTAATTGGGGTCATAGCTGACATGCTAAAGGAACTTGGCAAAGGTGACGGTGTATCTACATTTGAATTTATTGGTAGTGGTGTTGTTGCAGCTTTGTTGAATTATTTTTCCTGTGGGTACTTCTCTAAAGATAAATCCTCAGAAACCTGCTTACCAAACCTTCGCCAACAAGCACTTACAAGGTTTAAGTTATTTATAGCTGTTGCACTACCGTCCTCAACTGAAGTTGGGACTGTGCCTCCTATGACCGTCTTGGTTCAAAAGCTTCAAAATGCCTTGTCCTCATTGGAACGTTTCCCTGTTGTGCTGAGTCATTCATCCAGGTCATCTAGTGGGAGTACACGCCTCTCCTCTGGACTAAGTGCATTATCTCATCCCTTCAAGTTGCGGCTTTGTCGAGCCCAGGGTGAAAAGTCACTTAAGGATTATTCATCAAATGTTGTATTGGTTGACCCATTAGCAAGTTTAGCAGCCATTGAAGAATTTCTTTGGTCTCGTATCCAACGAAGTGAATCTGGTCAGAAGTCCACTGTACCTGCTGGTCATTCCGAATCAACTCCAGGAGCGGGTGTATCCACTACTTCTACTACCCGTCGTCATTCTACTAGATCCAGATCATCTGTTAATATAGGTGACACATCTAGGAAGCAAATACTTCAAGATAAAAGCACTAGCTCTTCTAAGAGTAAGGGAAAAGCTGTATTAAAGCCTGCGCAAGAGGAGTCAAGAGGACCTCAGACCAGGAATGCTACTCGCAGAAGAGCAGCTCTTGATAAAGATGCTCAAGCAAAGCCTGTAAATGGTGACTCTACTTCTGAGGATGAAGATTTGGATATATCTCCTGTTGAGATTGATGAGGCATTGGTGATTGAAGATGACGATATTTCTGATGATGAAGATGATGACCATGAAGATGTTCTGAGGGATGATTCTCTTCCTTTGGTGTGCTCTCCTGACAAAGTACATGATGTGAAATTGGGTGATTTGGCCGAGGAAAGTACTGTTGCTCCTGCGACAACTGATGGCCAGACTAATGCTGCTTCAGGTTCTAGCAGCAAAACTGGTACCGTGAGGGGATCAGACTCTGCTGATTTTAGGAGTGGCTATACATCAAGCTCAAGAGGTGCAATGTCATTTGCTGCTGCTGCCATGGCTGGACTTGGATCTGCCAATAACAGAGGTATCAGGGGTGGAAGAGATCGACTAGGGCGTCCATTATTTGGTAGTTCTAATGATCCTCCAAAGTTGATCTTTACTGCTGGTGGGAAGCAGCTTAATAGGCATTTGACTATATATCAGGCAATTCAAAGACAGCTTGTGCATGATGAAGACGATGAAGAGAGATTGGCTGGCAGTAATGACTATGTATCCGGTGATGGAAGCAGGTTGTGGGGTGATATTTATACTATAACTTATCAGAGGTCAGAGAACCAAACAGATAGGGCTACCCCTGGAGGTTCAAGCTCTAATGCTTCAAAATCTGGCAAATCTGGATCTGCATCAAATTCTGGTTCTGAAGCCAAGCTACATCAGACATCTGTATTAGATAGTATCTTGCAGGGTGAATTGCCCTGTGAATTGGAGAAATCTAATCCTACATACAATATATTAGCACTATTGCGGGTGCTAGAGGGTTTGAACCAACTAGCCCCTCGATTGAGGGCCCAAGTGGTTACCGATAACTTTGCAGAGGGTAAGATTTTGGATTTAGATGAGCTAAGTGTTACAAGTGGTGCTAGGGTTCCTGCAGAGGAATTTATAAGTGGCAAACTTACTCCAAAATTAGCTCGGCAAATACAAGATGCCCTTGCCTTATGTAGTGGGAGTCTTCCTTCATGGTGTTACCAGCTAACTAAAGCATGTCCTTTCTTGTTTCCTTTTGAGACCCGGAGACAGTACTTCTATTCAACTGCCTTTGGGTTATCCCGTGCACTGTATCGCCTTCAACAGCAGCAGGGTGCTGACGGTCATGGATCAACAAATGAAAGAGAGATCAGGGTTGGGAGATTGCAGCGGCAAAAGGTTCGTGTATCTCGAAACCGCATTTTGGATTCTGCTGCCAAAGTGATGGAGTTGTATTCTAGTCAAAAGGCTGTTCTTGAAGTAGAATATTTTGGTGAAGTTGGCACTGGTCTGGGTCCCACCTTGGAGTTCTACACACTTCTCAGTCATGACTTACAAAGAGTTGGACTTCGAATGTGGAGATCAGGTTCTTCAGAGAAATATTCAATGGAAATTGATGGAAATGAAAGGAAAATGAAAAGTAGCGATGGCTCTTCTGCTGTAGATGGAGAACTTGTTCAGGCTCCTCTTGGGCTGTTTCCTCGACCATGGCCTGCAAATTCTGATACGTCTGAGGGTACCCCATTTTTTAGAGTTATTGAATATTTCCGGCTATTAGGTCGTGTAATGGCTAAAGCTCTCCAAGATGGACGCCTATTGGATTTACCACTGTCAGCGGCATTTTATAAGCTTGTTCTTGGTCAAGATCTTGATTTGCATGACATTCTTTTCATTGATGCCGAGCTTGGGAAAACTTTACAAGAGTTAAATGCCCTTGTTTGCCGAAAACGATATATCGAATCTTTTGGTGGTTGCTATACTGATAAGGGTAATTTACAATTTCGTGGGGCTCAAATTGAAGATCTCTGCTTTGACTTTACGCTTCCTGGTTATCCAGAGTACATCTTGAAACCTGGAGATGAAATTGTTGACATCAATAATCTGGAGGAGTACATATCCATGGTGGTCGAGGCAACTGTTAAGACAGGAATCTTGCGTCAGATGGAAGCATTTAGGGCAGGGTTCAATCAGGTTTTTGAAATCTCATCTTTGCAAATTTTTACTCCCCAAGAACTGGATTATTTGCTTTGCGGCCGTAGAGAATTGTGGAAGACTGAGACACTTGCTGATCATATTAAATTTGACCATGGTTATACTGCCAAGAGCCCAGCCATAGTTAATTTACTAGAAATCATGGGAGAATTCACACCAGAACAGCAGCGAGCCTTCTGTCAGTTTGTTACTGGTGCACCTAGACTTCCACCTGGTGGACTGTCAGTTCTAAATCCAAAACTAACAATTGTGAGGAAGCTTTCGTCAAGTGCAGCTAATGCTTCATCTAATGGGAACGGGCCTTCAGAATCAGCGGATGATGACTTGCCAAGTGTGATGACGTGTGCAAATTACCTGAAACTTCCTCCTTATTCTACCAAGGAAATTATGTACAAGAAGCTACTCTATGCAATCAATGAAGGCCAGGGATCCTTTGATTTATCATGA 5631 0.4434 METRSRKRAEASSAAPSSPSSGPTTRSSKRARLSSSSSASAAATATASISSVNTRSRASRTKEQPLPPKNPPPMDSANESSGSRRDRRSKDNSDKGKEKEHDVRIRDRDADRGLALNMDGGAEDDDNDSEGGVGILHQNLTSASSALQGLLRKLGAGLDDLLPSSAMGSASSSHQNGRLKKILFGLRAEGEEGRQVEALTQLCEMLSIGTEESLSTFSVDSFVPVLVGLLNHENNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVSIFCARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDASDFVMEAVPLLTNLLHYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAASLISNSSSGGGQASLSTPTYTGLIRLLSTCASGSPLGAKTLLLLGISGILKDILSGSGVSSNASVSPALSRPPEQIFEIVNLANELLPPLPQGTISLPIISNMFMKGPIIRKSPAGSSGKQEDSNGNVTEISAREKLLNDQPELLKQFAMDLLPVLIQIYGSSVNGPVRHKCLSVIGKLMYFSTAEMIQSLLSVTNISSFLAGVLAWKDPHVLVPALKIAEILMEKLPGTFSKMFIREGVVHAVDQLILPTNSTNISTQASSAEKDNDSISGASSRSRRYRRRSGSSNPDGNPLDDLKAPVSVNVGSPPSSVDIPTVNSSIRMSVSAAAKAFKDKYFPSDAGASEVGITDDLLNLKNLCMKLNTDADEERTNGKGKSKSSGFVLEEYLIGVIADMLKELGKGDGVSTFEFIGSGVVAALLNYFSCGYFSKDKSSETCLPNLRQQALTRFKLFIAVALPSSTEVGTVPPMTVLVQKLQNALSSLERFPVVLSHSSRSSSGSTRLSSGLSALSHPFKLRLCRAQGEKSLKDYSSNVVLVDPLASLAAIEEFLWSRIQRSESGQKSTVPAGHSESTPGAGVSTTSTTRRHSTRSRSSVNIGDTSRKQILQDKSTSSSKSKGKAVLKPAQEESRGPQTRNATRRRAALDKDAQAKPVNGDSTSEDEDLDISPVEIDEALVIEDDDISDDEDDDHEDVLRDDSLPLVCSPDKVHDVKLGDLAEESTVAPATTDGQTNAASGSSSKTGTVRGSDSADFRSGYTSSSRGAMSFAAAAMAGLGSANNRGIRGGRDRLGRPLFGSSNDPPKLIFTAGGKQLNRHLTIYQAIQRQLVHDEDDEERLAGSNDYVSGDGSRLWGDIYTITYQRSENQTDRATPGGSSSNASKSGKSGSASNSGSEAKLHQTSVLDSILQGELPCELEKSNPTYNILALLRVLEGLNQLAPRLRAQVVTDNFAEGKILDLDELSVTSGARVPAEEFISGKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGADGHGSTNEREIRVGRLQRQKVRVSRNRILDSAAKVMELYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSHDLQRVGLRMWRSGSSEKYSMEIDGNERKMKSSDGSSAVDGELVQAPLGLFPRPWPANSDTSEGTPFFRVIEYFRLLGRVMAKALQDGRLLDLPLSAAFYKLVLGQDLDLHDILFIDAELGKTLQELNALVCRKRYIESFGGCYTDKGNLQFRGAQIEDLCFDFTLPGYPEYILKPGDEIVDINNLEEYISMVVEATVKTGILRQMEAFRAGFNQVFEISSLQIFTPQELDYLLCGRRELWKTETLADHIKFDHGYTAKSPAIVNLLEIMGEFTPEQQRAFCQFVTGAPRLPPGGLSVLNPKLTIVRKLSSSAANASSNGNGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLLYAINEGQGSFDLS 1876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02471 1876 Gene3D - 188 659 IPR011989 -
Vimu5g02471 1876 MobiDBLite consensus disorder prediction 1 133 - -
Vimu5g02471 1876 MobiDBLite consensus disorder prediction 1258 1290 - -
Vimu5g02471 1876 Pfam HECT-domain (ubiquitin-transferase) 1504 1876 IPR000569 GO:0004842
Vimu5g02471 1876 MobiDBLite consensus disorder prediction 1119 1152 - -
Vimu5g02471 1876 Gene3D Hect, E3 ligase catalytic domains 1396 1639 - -
Vimu5g02471 1876 ProSiteProfiles HECT domain profile. 1577 1876 IPR000569 GO:0004842
Vimu5g02471 1876 MobiDBLite consensus disorder prediction 1029 1043 - -
Vimu5g02471 1876 CDD HECTc 1456 1871 IPR000569 GO:0004842
Vimu5g02471 1876 MobiDBLite consensus disorder prediction 80 114 - -
Vimu5g02471 1876 SUPERFAMILY ARM repeat 179 650 IPR016024 -
Vimu5g02471 1876 MobiDBLite consensus disorder prediction 652 670 - -
Vimu5g02471 1876 MobiDBLite consensus disorder prediction 1055 1089 - -
Vimu5g02471 1876 SMART arm_5 336 374 IPR000225 GO:0005515
Vimu5g02471 1876 SMART arm_5 210 251 IPR000225 GO:0005515
Vimu5g02471 1876 SMART arm_5 293 333 IPR000225 GO:0005515
Vimu5g02471 1876 Gene3D Hect, E3 ligase catalytic domain 1748 1874 - -
Vimu5g02471 1876 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 221 249 IPR000225 GO:0005515
Vimu5g02471 1876 MobiDBLite consensus disorder prediction 1117 1152 - -
Vimu5g02471 1876 FunFam E3 ubiquitin-protein ligase UPL3 1397 1638 - -
Vimu5g02471 1876 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 10 1876 IPR045322 GO:0006511|GO:0061630
Vimu5g02471 1876 MobiDBLite consensus disorder prediction 954 1015 - -
Vimu5g02471 1876 FunFam Putative E3 ubiquitin-protein ligase HECTD1 1745 1875 - -
Vimu5g02471 1876 MobiDBLite consensus disorder prediction 10 63 - -
Vimu5g02471 1876 MobiDBLite consensus disorder prediction 652 706 - -
Vimu5g02471 1876 MobiDBLite consensus disorder prediction 954 1094 - -
Vimu5g02471 1876 SUPERFAMILY Hect, E3 ligase catalytic domain 1449 1869 IPR035983 GO:0004842
Vimu5g02471 1876 SMART hect_3 1467 1876 IPR000569 GO:0004842
Vimu5g02471 1876 FunFam HECT ubiquitin protein ligase family protein KAK 172 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02471 Vimu-Chr5 35155473 35165981 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02471 K10590 - gmx:100783336 3116.25