Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02469 ATGGGTAATGCATCCTCCATTAAACCCACGTGGAAGATAGTGACAAGTGAAATATGTGAACGTGTGCTGAAGAAAAACACTTTGACCCTCTTAGGGCAAGTTCGCAAGGCCAATGCTACCTGCACCTCCGTTGTGCGTTTTGGTGGCAGTTGGTGGTGGTTTGTAGTTGGCCGAGATGGTGGTGGTTCTGACAATCTCAACATGTTGACCATCAAACTTGCTTTGATTACCTTGCTTTTCATCACTGTTACCAGCGAAGATAAGAATAAGGAAGTCACATACGATAGCAGGTCGCTCATCATCAATGGAAAACGGGAGCTTCTCTTCTCCGGTTCCGTCCATTACACTCGAAGTCCCCCTGAGATGTGGCCACAGATTATTGACAAAGCTAGACGTGGAGGTATAAACGTGATTCAAACGTACATCTTCTGGAATGTTCATGAGCCTGTAGAAGGCAAGTTCAAAGTGGATCCGGAGTATGATTTCGTGAAGTTCATGCAGCTCTGTCATGACAAAGGAATGTATGTTACCCTCAGGGTTGGACCTTTCATCCAAGCTGAATGGAATCACGGAGGACTTCCGTATTGGCTAAGAGAGGTTCCTGGTATCATATTCCGTTCAAACAATGAAGCCTTTAAGAAATACATGAAAGAATATACAAAAACTGTTATAAAATTATGTCAAGACGCGAAGCTCTTCGCTCCCCAAGGAGGCCCCATCATCATGGCACAGATCGAGAATGAGTACAACCATATCCAACGTGCTTTTAGAGAGGACGGAGATAAGTACGTCCAATGGGCTGCAAGTCTGGCAGTTTCACTGAATGTTGGAGTTCCATGGATCATGTGCAAACAAACGGATGCTCCTGATCCAGTGGTTAATGCATGCAACGGAAGACACTGTGGTGATACCTTTGCAGGCCCTAACAAACCCGACAAGCCTGTTCTGTGGACTGAAAACTGGACTGCTCAGTATAGGGTGTTTGGAGATCCACCATCGCAAAGATCAGCAGAAGACATTGCCTTCTCAGTTGCCCGTTTCTTCTCTAAGAATGGGTCTTTGATGAACTACTATATGTACTATGGTGGAACAAATTTTGGTAGAACAAGCTCTGCCTTCAGTACAACCCGATATTACGATGAAGCCCCGCTTGATGAATTCGGTTTGCAGAGAGACCCAAAATGGAGTCACCTGAGAGACGTGCACAAGGCATTGACCCTATGCAGGCAGTCCCTGTTCGGTGCTGAATCGGCGGTCACAAAAGTTAACCAGCATCATGAGATTATAGTTTTCGAGAAGAAAGGTAGTCACTTATGTACTGCTTTCATCACTAACAACCACACCAAAAATTCAGCCACCATAAAGTTCAGAGAAACGGACTATTTTCTGCCACCACGTTCCATCAGTATCCTCCCTGACTGCAAGACTGTGGTTTTCAACACCCAAAATGTCGCTTCACAACATAATTCAAGGAACTTCAAGAAGTCAAAAAATGCAAACAATTTCAAGTGGGAGGTGTTTACTGAAACCATTCCAGTCGCCAAGGATATAAAAGTTAGTGGAAATGTTCCCGCTGAACTTTATAGCTTGCTTAAAGACACCACAGACTATGCATGGTACACCACCAGCGTGGAATTGGGTCCGGAAGACTTGCCAAAGAAGAGTGACGTATCCACCGTTATTCGTATTTTGAGTCTTGGCCATTCACTGCATACCTTTGTAAATGGAGAATTTATTGGAACAAATCATGGTACTCATGAAGAGAAAGGTTTTGAATTCCAGAAAGCTGTAACCTTCAAGGTTGGAGTTAACAACATAGCTATCTTGGCTGCCACTGTTGGACTCCCTGACAGTGGTGCATACATGGAGCACAGGTATGCTGGACCAAAGTCTATACTCATCCTTGGTCTTAACTCTGGAAAAATTGATCTGACTTCTAATGGTTGGGGCACTAAGGTTGGAATCCAAGGAGAGGAGTATGCCGTTTTCACTGAGGAGGGATCAAAGAAAGTAGAATGGAAAGAGGTGGCCAAGGGAAATGGAAAGTCTCTCTCGTGGTACAAGACAACTTTTACAAAACCAGAGGGAAGGGATCCTGTTGCCATAAAGATGACAGGTATGGGGAAGGGAATGATTTGGATCAATGGCAAAAGCATTGGTCGTCATTGGATGAGTTTCCTCTCTCCCCTTGGAAGCCCTACTCAGTCAGAGTACCACATCCCAAGAACTTACTTAAATAAAAAAGACAATCTCCTTGTGATATTTGAGGAAGAGCAAGCAGACCCAAGTCAGATTGAGATTCAAACGGTTGACAGAGATACAATATGCAGTATTATCACAGAGAATCACCCTCCCAACGTCAATTCCTGGGCATCTAAGGGTGGCAAGTTCCAGACTGTTGTGGAAAATCCGAAGCCAACAGCTACAGTCATATGTCCAAACCACAAAACCATTAAGGCTGTGGAGTTTGCAAGCTTTGGTGATCCCACGGGTGTCTGTGGAGAGTTTGTTAAGGGAAAATGCGATGCCTCTGCCACCAAGCAGATTCAATGCATGGGAAAACAGACATGCTCGATTCCACTTGAAGCGTCAACCTTCACCAAGGGAAAAGATCCTTGCCCAGATGTGTCGAAGACTCTTGCAATTCAAGTGAAGTGTGACTTATAG 2667 0.4458 MGNASSIKPTWKIVTSEICERVLKKNTLTLLGQVRKANATCTSVVRFGGSWWWFVVGRDGGGSDNLNMLTIKLALITLLFITVTSEDKNKEVTYDSRSLIINGKRELLFSGSVHYTRSPPEMWPQIIDKARRGGINVIQTYIFWNVHEPVEGKFKVDPEYDFVKFMQLCHDKGMYVTLRVGPFIQAEWNHGGLPYWLREVPGIIFRSNNEAFKKYMKEYTKTVIKLCQDAKLFAPQGGPIIMAQIENEYNHIQRAFREDGDKYVQWAASLAVSLNVGVPWIMCKQTDAPDPVVNACNGRHCGDTFAGPNKPDKPVLWTENWTAQYRVFGDPPSQRSAEDIAFSVARFFSKNGSLMNYYMYYGGTNFGRTSSAFSTTRYYDEAPLDEFGLQRDPKWSHLRDVHKALTLCRQSLFGAESAVTKVNQHHEIIVFEKKGSHLCTAFITNNHTKNSATIKFRETDYFLPPRSISILPDCKTVVFNTQNVASQHNSRNFKKSKNANNFKWEVFTETIPVAKDIKVSGNVPAELYSLLKDTTDYAWYTTSVELGPEDLPKKSDVSTVIRILSLGHSLHTFVNGEFIGTNHGTHEEKGFEFQKAVTFKVGVNNIAILAATVGLPDSGAYMEHRYAGPKSILILGLNSGKIDLTSNGWGTKVGIQGEEYAVFTEEGSKKVEWKEVAKGNGKSLSWYKTTFTKPEGRDPVAIKMTGMGKGMIWINGKSIGRHWMSFLSPLGSPTQSEYHIPRTYLNKKDNLLVIFEEEQADPSQIEIQTVDRDTICSIITENHPPNVNSWASKGGKFQTVVENPKPTATVICPNHKTIKAVEFASFGDPTGVCGEFVKGKCDASATKQIQCMGKQTCSIPLEASTFTKGKDPCPDVSKTLAIQVKCDL 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02469 888 PRINTS Glycosyl hydrolase family 35 signature 709 725 IPR001944 GO:0004553|GO:0005975
Vimu5g02469 888 PRINTS Glycosyl hydrolase family 35 signature 316 331 IPR001944 GO:0004553|GO:0005975
Vimu5g02469 888 PRINTS Glycosyl hydrolase family 35 signature 102 119 IPR001944 GO:0004553|GO:0005975
Vimu5g02469 888 PRINTS Glycosyl hydrolase family 35 signature 682 696 IPR001944 GO:0004553|GO:0005975
Vimu5g02469 888 PRINTS Glycosyl hydrolase family 35 signature 235 250 IPR001944 GO:0004553|GO:0005975
Vimu5g02469 888 PRINTS Glycosyl hydrolase family 35 signature 178 197 IPR001944 GO:0004553|GO:0005975
Vimu5g02469 888 PRINTS Glycosyl hydrolase family 35 signature 123 141 IPR001944 GO:0004553|GO:0005975
Vimu5g02469 888 PRINTS Glycosyl hydrolase family 35 signature 353 368 IPR001944 GO:0004553|GO:0005975
Vimu5g02469 888 PRINTS Glycosyl hydrolase family 35 signature 372 388 IPR001944 GO:0004553|GO:0005975
Vimu5g02469 888 CDD Gal_Rha_Lectin_BGal 799 886 - -
Vimu5g02469 888 Pfam Beta-galactosidase jelly roll domain 675 755 IPR025300 -
Vimu5g02469 888 Pfam Galactose binding lectin domain 812 886 IPR000922 GO:0030246
Vimu5g02469 888 Pfam Beta-sandwich domain in beta galactosidase 416 484 IPR041392 -
Vimu5g02469 888 FunFam Beta-galactosidase 88 408 - -
Vimu5g02469 888 FunFam Beta-galactosidase 651 776 - -
Vimu5g02469 888 Gene3D - 480 627 - -
Vimu5g02469 888 Gene3D - 652 782 - -
Vimu5g02469 888 SUPERFAMILY Galactose-binding domain-like 647 796 IPR008979 -
Vimu5g02469 888 PANTHER BETA-GALACTOSIDASE RELATED 79 798 IPR001944 GO:0004553|GO:0005975
Vimu5g02469 888 Pfam Glycosyl hydrolases family 35 98 404 IPR031330 -
Vimu5g02469 888 SUPERFAMILY (Trans)glycosidases 89 408 IPR017853 -
Vimu5g02469 888 Gene3D Glycosidases 88 408 - -
Vimu5g02469 888 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 237 249 IPR019801 GO:0004553|GO:0005975
Vimu5g02469 888 Gene3D - 796 888 IPR043159 -
Vimu5g02469 888 ProSiteProfiles SUEL-type lectin domain profile. 802 887 IPR000922 GO:0030246
Vimu5g02469 888 SUPERFAMILY Galactose-binding domain-like 468 629 IPR008979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02469 Vimu-Chr5 35145568 35152885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02469 89 886 Glycoside Hydrolase AT4G35010 57.373 0.0 1004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02469 - - gmx:102663614 1315.44