Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02468 ATGGCAACCAAGAGAATACTGAAGGAGCTCAAGGACTTACAGAGAGATCCACCAACTTCATGCAGTGCAGGGCCTGTGGGTGAGGACATGTTCAATTGGCAAGCCACCATCATTGGTCCAAATGACAGTCCTTATACTGGCGGCGTTTTCCTCGTCATCATTCATTTCCCTCCTGATTATCCCTTCAAACCTCCAAAGCTAGTACCAAAAACTATTTTACAGGTTGCATTCAGGACCAAGGTATTCCATCCCAACATTAACAGCAATGGCAATATTTGCCTGGACATACTCAAAGAACAATGGAGTCCTGCTCTCACCATATCAAAGGTGCTGCTTTCTATCTGTTCTCTGCTAACGGATCCAAACCCTGATGACCCTTTGATGCCTGAAATTGCTCACATGTGCAAGACCGACAAAGTCAAGTATGAGTCCACTGCTAGAAGCTGGACCCAGAAGTATGCCATGGGCTAA 471 0.4586 MATKRILKELKDLQRDPPTSCSAGPVGEDMFNWQATIIGPNDSPYTGGVFLVIIHFPPDYPFKPPKLVPKTILQVAFRTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLMPEIAHMCKTDKVKYESTARSWTQKYAMG 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02468 156 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 155 IPR000608 -
Vimu5g02468 156 FunFam Ubiquitin-conjugating enzyme 28, E2 1 156 - -
Vimu5g02468 156 Gene3D Ubiquitin Conjugating Enzyme 1 156 IPR016135 -
Vimu5g02468 156 SUPERFAMILY UBC-like 1 155 IPR016135 -
Vimu5g02468 156 CDD UBCc 3 150 IPR000608 -
Vimu5g02468 156 SMART ubc_7 4 155 - -
Vimu5g02468 156 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 29 143 - -
Vimu5g02468 156 Pfam Ubiquitin-conjugating enzyme 5 149 IPR000608 -
Vimu5g02468 156 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 82 97 IPR023313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02468 Vimu-Chr5 35138540 35142852 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02468 2 122 Miscellaneous Gene Families AT3G17000 33.858 2.33e-19 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02468 K06689 - gmx:100787053 298.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02468 5 35138540 35142852 Vimu5g02468 5 35138540 35142852 ECH