Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02465 ATGGGTGCTTTGGATCACATCTCCGACCTCTTCGACTGCTCCCACACCAGTTCCAAACTCAAGAAGAAGCGCAAACAATTCCAGACGGTGGAGGTGAAAGTGAAGATGGACTGTGAAGGGTGTGAGAGGAAGGTGAAGAAATCGGTGGAGGGAATGAAAGGGGTGACTCAGGTGGAGGTGGATCGGAAGGCTAGTAAGGTCACTGTTTCGGGCTACGTTGAACCCTCTAAGGTTGTGTCTCGCATCTCTCACCGCACCGGAAAGAGAGCGGAGCTATGGCCGTATGTCCCGTACGACGTCGTTGCGCACCCTTACGCGCCCGGTGTCTACGACAAGAAAGCGCCCTCTGGGTACGTGCGAAACGCCGACGTTGACCCTCGTCTGACTAACCTCGCACGTGCCAGCTCCACCGAGGTCAGGTACACCACCGCCTTCAGCGACGACAACCCCGCCGCATGTGTCGTCATCCCAGCCCAGCCCAAGCCCATTTTCACTGTACAGGGGGACTATTTAAAGCCGTGTTTCCCTCCGAAAGTGGCATTGGCGCGCGAGGGTTTGAAGTTTTGGCGCAGAAAAAAAATGGCGGAAGAGTATAATGAAGGTGAAGTTGAAGAAGAGTTCTCCGTTTGGAAGAAGAACACTCCTCTGTTGTACGATTTGTTCATTTCTCATCATCTTCAATGGCCCTCTCTCACTGTTCACTGGCTTCCTTCCTCTCCCCAACCCCACTCCCACCCTTCCTTCAATGTCCACAAACTCCTCCTCGCTACTCACACTGCCCAGGGCGAACCCAATTTCCTCATGCTCGCCGACGCATCCCTCCCCGCCGACACCTCACAACCCATCGTTGCCACCGACCCTAACGACCCTGTTCTCCCCAAGGTAGAAATTTCCCAAAAGGTTGCTGTTGACGGGGAGGTGAATCGAGCGCGTTGTATGCCGCAGAACCCTACTATTGTTGCTGCGAAGACATGTAATTCCGAGGTATATGTGTTTGATTTCAATAAGCAGCGTGGGAGCGAGTTTGCCCCTGATTTGAGGTTAAGGGGTCATGATAAAGAGGGCTATGGTTTGTCTTGGAGCCCTTTCAAGAGTGGTTATCTTTTGAGTGGTTCGCATGACCATAAGATTTGCTTGTGGGACGTGCCTGCTGCTTCTCAAGAGAGTGTGATTGATGCAGTTCATGTTTACGAGGGCCATGAGAGTGTGGTTGAAGATGTGTCCTGGAATATGAAGGATGAGAATATGTTTGGATCTGTAGGAGATGACTTTAAATTGGTCATTTGGGACTTACGGACTAACAAACCCCAACAATCAGTCAAACCACATGATAACGAGATCAGCATTGTGACTTGTGAGTCTGATGATTGTTTCTCTGTGCATGCGGAAGTTGCACTGCTTCCATATAACGAATGGATTTTGGCTACAGCATCTTCAGATACAAGTGTTGGTCTATTTGACACTCGGAAGCTGGCAATTCCACTACATTTTTTAAGTAGCCACACCGATGAAGTATTCCAGGTTGAGTGGGATCCTAATCACGAGACTGTGTTGGCATCGTCTGGCGCTGACCGACGGCTGATGGTTTGGGATCTTAGCAGGATCGGAGATGAGCAGATAGAGGGAGATGGTGAGGGTGGCCCTACCGAATTACTCTTCTCTCACGGGGGTCACAAAGGGAAAATATCAGATTTTTCATGGAACATAAATCAGCCATGGGTTATCTCAAGTGTAGCTGAGGACAACTCTTTCCATGTATGGCAAATGGCGGAGAGCATTTACAATGATGGAGACGATGACAACATGTGGACGGCCAATGATTAA 1824 0.5005 MGALDHISDLFDCSHTSSKLKKKRKQFQTVEVKVKMDCEGCERKVKKSVEGMKGVTQVEVDRKASKVTVSGYVEPSKVVSRISHRTGKRAELWPYVPYDVVAHPYAPGVYDKKAPSGYVRNADVDPRLTNLARASSTEVRYTTAFSDDNPAACVVIPAQPKPIFTVQGDYLKPCFPPKVALAREGLKFWRRKKMAEEYNEGEVEEEFSVWKKNTPLLYDLFISHHLQWPSLTVHWLPSSPQPHSHPSFNVHKLLLATHTAQGEPNFLMLADASLPADTSQPIVATDPNDPVLPKVEISQKVAVDGEVNRARCMPQNPTIVAAKTCNSEVYVFDFNKQRGSEFAPDLRLRGHDKEGYGLSWSPFKSGYLLSGSHDHKICLWDVPAASQESVIDAVHVYEGHESVVEDVSWNMKDENMFGSVGDDFKLVIWDLRTNKPQQSVKPHDNEISIVTCESDDCFSVHAEVALLPYNEWILATASSDTSVGLFDTRKLAIPLHFLSSHTDEVFQVEWDPNHETVLASSGADRRLMVWDLSRIGDEQIEGDGEGGPTELLFSHGGHKGKISDFSWNINQPWVISSVAEDNSFHVWQMAESIYNDGDDDNMWTAND 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02465 607 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 498 533 - -
Vimu5g02465 607 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 348 382 - -
Vimu5g02465 607 Pfam WD domain, G-beta repeat 552 587 IPR001680 GO:0005515
Vimu5g02465 607 Pfam WD domain, G-beta repeat 349 381 IPR001680 GO:0005515
Vimu5g02465 607 Pfam WD domain, G-beta repeat 394 430 IPR001680 GO:0005515
Vimu5g02465 607 Pfam WD domain, G-beta repeat 494 531 IPR001680 GO:0005515
Vimu5g02465 607 ProSitePatterns Trp-Asp (WD) repeats signature. 368 382 IPR019775 -
Vimu5g02465 607 ProSiteProfiles Trp-Asp (WD) repeats profile. 348 390 IPR001680 GO:0005515
Vimu5g02465 607 Gene3D - 24 91 - -
Vimu5g02465 607 ProSiteProfiles Trp-Asp (WD) repeats profile. 498 533 IPR001680 GO:0005515
Vimu5g02465 607 Pfam Histone-binding protein RBBP4 or subunit C of CAF1 complex 205 275 IPR022052 -
Vimu5g02465 607 SUPERFAMILY HMA, heavy metal-associated domain 27 94 IPR036163 GO:0046872
Vimu5g02465 607 ProSiteProfiles Heavy-metal-associated domain profile. 27 91 IPR006121 GO:0046872
Vimu5g02465 607 PRINTS G protein beta WD-40 repeat signature 368 382 IPR020472 -
Vimu5g02465 607 PRINTS G protein beta WD-40 repeat signature 474 488 IPR020472 -
Vimu5g02465 607 PRINTS G protein beta WD-40 repeat signature 518 532 IPR020472 -
Vimu5g02465 607 SMART WD40_4 293 333 IPR001680 GO:0005515
Vimu5g02465 607 SMART WD40_4 491 531 IPR001680 GO:0005515
Vimu5g02465 607 SMART WD40_4 433 487 IPR001680 GO:0005515
Vimu5g02465 607 SMART WD40_4 390 430 IPR001680 GO:0005515
Vimu5g02465 607 SMART WD40_4 548 588 IPR001680 GO:0005515
Vimu5g02465 607 SMART WD40_4 341 381 IPR001680 GO:0005515
Vimu5g02465 607 FunFam Heavy metal-associated isoprenylated plant protein 26 15 93 - -
Vimu5g02465 607 ProSitePatterns Trp-Asp (WD) repeats signature. 518 532 IPR019775 -
Vimu5g02465 607 ProSiteProfiles Trp-Asp (WD) repeats profile. 397 439 IPR001680 GO:0005515
Vimu5g02465 607 Pfam Heavy-metal-associated domain 32 88 IPR006121 GO:0046872
Vimu5g02465 607 SUPERFAMILY WD40 repeat-like 303 589 IPR036322 GO:0005515
Vimu5g02465 607 PANTHER WD40 REPEAT FAMILY 195 600 - -
Vimu5g02465 607 Gene3D - 189 605 IPR015943 GO:0005515
Vimu5g02465 607 CDD HMA 31 91 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02465 Vimu-Chr5 35121295 35125299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02465 365 589 Miscellaneous Gene Families AT5G08390 22.667 2.33e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02465 K10752 - gmx:100791834 710.294