Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02452 ATGGGCTTCCGTATACCAGCTATTCAACGGCCATCAGTCACAGCTAGGCAAGCAGCTTCAAAATCTGTAGAAGTCCCAAAGGGCTATCTTGCAGTGTATGTTGGAGAGAAACAGACACGATTTGTGATTCCCGTATCATATTTGAACCAACCTTCATTTCAAGACTTATTGAGTCAAGCAGAGGAAGAGTTTGGATATGATCATCCCATGGGTGGCCTCACAATTCCTTGCAAAGCAAAAACAATGGGTTTTCAGTTACTTGGAAGACGGACATCATTTACAAGCCAAGCTAGAAAGGTTGCGGAAGTCCCAAAAGGCTACCTTGCAATCTACGTTGGAGAGAAAATGAAGAGGTTCATGATTCCCGTATCATTCTTGAACCAGCCTTTATTTCAAGAATTGCTAAAACAAGCTGAAGATGAGTTCGGCTATGATCATCCTATGGGAGGACTCACAATTCCCTGCAAGGAAGATGTGTTCTTAGATATAGCTTCTCGCTTGAATGTGCAGTAG 513 0.4288 MGFRIPAIQRPSVTARQAASKSVEVPKGYLAVYVGEKQTRFVIPVSYLNQPSFQDLLSQAEEEFGYDHPMGGLTIPCKAKTMGFQLLGRRTSFTSQARKVAEVPKGYLAIYVGEKMKRFMIPVSFLNQPLFQELLKQAEDEFGYDHPMGGLTIPCKEDVFLDIASRLNVQ 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02452 170 Pfam Auxin responsive protein 15 82 IPR003676 GO:0009733
Vimu5g02452 170 Pfam Auxin responsive protein 92 166 IPR003676 GO:0009733
Vimu5g02452 170 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 96 167 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02452 Vimu-Chr5 35060745 35062814 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02452 14 86 Calmodulin-binding Proteins AT3G43120 49.315 7.53e-18 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02452 - K14488 pcin:129286196 233.417