Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02447 ATGGGTTTTCGTTTACCTGCTATCAAGAAGGCATCCCTTAATAAAATCAAAGAATCTTCAAAAGCTATGGACGTGCCAAAGGGCTACCTTGCGGTCTATGTTGGAGAGAAAATGAAGCGGTTCATGATTCCTGTATCATTCTTGAACCAACCTTCATTTCAAGATTTGTTGAGTCAAGCCGAGGAAGAATTTGGGTATGACCATCCATTGGGTGGCCACCCATGGGATGATCATGTCCAAACTCTTCTTCAAGTTGACTTAGTAAGTCTTGGAATGAAGGATGACTCAAGTATGATACAGGTATCAAAAACCTCTTCTTTTCCTCTCCAACGTACACAGCAAGATATCCCTATGGAACTTTTACTGATTTTGAAGTTGGTTACTTGGTTGGTGAAGGTGAGGGGAAAGTGTATTTATAGTCTTCAAAATTATGTTCAAAACAAATATGAAGAGAAATGGATGGTAATGGATGGAGGACATAGAGATGAGATATCACGTGGTTGTCTTAGACACTTCTTTATCAATGGTGCAGCTGTGTAG 540 0.3981 MGFRLPAIKKASLNKIKESSKAMDVPKGYLAVYVGEKMKRFMIPVSFLNQPSFQDLLSQAEEEFGYDHPLGGHPWDDHVQTLLQVDLVSLGMKDDSSMIQVSKTSSFPLQRTQQDIPMELLLILKLVTWLVKVRGKCIYSLQNYVQNKYEEKWMVMDGGHRDEISRGCLRHFFINGAAV 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02447 179 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 15 72 IPR003676 GO:0009733
Vimu5g02447 179 Pfam Auxin responsive protein 15 68 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02447 Vimu-Chr5 35031052 35033329 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02447 24 68 Calmodulin-binding Proteins AT3G43120 62.222 4.98e-15 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02447 - K14488 gmx:100795597 124.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02447 5 35031052 35033329 Vimu5g02447 5 35031052 35033329 ECH