Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02444 ATGGATGACTATGAGATAAGAGTCATGGGACCGATAGGACAGAAAGGGCACATGGGATTAATGGGAGATGTTATAGTTGACAGTACACTATCCCAAGCCAATTCACTTGAAATAGACCACGTCTCATTGGGAACATGTGGAGGCTTAATGTTTCCTGCTGTTCAACAAGGTGGGGTTACACACCTGCACCCTACTTTATGCTTGATAGAACACCAAAATTTAGATTCATTCTCTGTATATTTGAGATTGTTCTTCTTCCTTAAACGACCTCAAAAAATGGGTTTCCGTTTACCTGCCATCCGACGGGCATCATCACTCACAGCAAGACAAGCATCTCCAAAATCTGACAACATACCGAAGGGCTATTTTGCCGTTAAAGTTGGAGAGAAACAAAATCGGTTTGTGATTCCCATCTCTTACTTGAACCAACCTTCATTCCAAGACTTACTAAGTCAAGCTGAGGAAGAGTTTGGATATGATCATCCCATGGGAGGCCTCACAATTCCATGCAGTGAAGATGTCTTCCAACATACAATTTCTTGCTTCAAGGGACAATAA 558 0.4194 MDDYEIRVMGPIGQKGHMGLMGDVIVDSTLSQANSLEIDHVSLGTCGGLMFPAVQQGGVTHLHPTLCLIEHQNLDSFSVYLRLFFFLKRPQKMGFRLPAIRRASSLTARQASPKSDNIPKGYFAVKVGEKQNRFVIPISYLNQPSFQDLLSQAEEEFGYDHPMGGLTIPCSEDVFQHTISCFKGQ 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02444 185 Pfam Auxin responsive protein 102 181 IPR003676 GO:0009733
Vimu5g02444 185 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 110 180 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02444 Vimu-Chr5 35018500 35019378 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02444 107 184 Calmodulin-binding Proteins AT3G43120 43.590 7.67e-17 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02444 - K14488 gmx:100816803 145.591
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02444 5 35018500 35019378 Vimu5g02444 5 35018500 35019378 ECH