Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02439 ATGACCATCAGCTCATCTTCGAAAAAGCACGGTCAAGATCAGCCAGAATTAAGTGGTCCTACCCCCAAATCCCAGCGAACCAAAATGGGCAAATCTGATGACAACGATAAGAAGAACCTGGGTAAGAAACTCAAAGATGTGGAAATAAGCGTTCCAATAGTGTATGGAAACATAGCATTTTGGCTTGGGAAAAAGGCTAGCGAGTATCAGTCGCATAAATGGACAGTATATGTTCGTGGAGCAACCAATGAGGATCTTGGGGCGATAATAAAACGTGTTGTTTTTCAGTTGCATTCCAGTTTCAATAATCCCACCCGTGTTGTGGAGTCTCCACCTTTTGAACTCTCAGAGGCAGGATGGGGGGAATTTGAAGTTGCCATCACACTTTATTTTCACAGTGATGTTTGTGACAAGCCTTTGAACTTATATCATCACTTGAAGCTGTATCCAGAGGATGAAAACAGTTCCATGTCTGCAAAGAAGCCTGTTGTTGTGGAGTTTTATGATGAGATAGTTTTCCCTGATCCTTCGGAGGCCTTTTTAGCTCGTTTGCAGAGTCATCCAGCTGTGAACTTACCAAGATTACCTGCTGGGCTTACATTGCCTCCTCCCGTACCTGTTGAGGATGCAAGTAAACGGAGGAAAGGTGATACTAAAGATCATTCTTTAAGTCAATGGTTCACGAATTTCTCAGAAGCAGATGAGCTCTTGCAGCTTGCGGCAGCTCGACAGCAGGTTCAAGCACATATTGCTAAACTCAGACGACAGATAAACCTGATAGATGGACAGCATCAGCAGTTTAAATCTTCTTCTGACCAGTAG 822 0.4355 MTISSSSKKHGQDQPELSGPTPKSQRTKMGKSDDNDKKNLGKKLKDVEISVPIVYGNIAFWLGKKASEYQSHKWTVYVRGATNEDLGAIIKRVVFQLHSSFNNPTRVVESPPFELSEAGWGEFEVAITLYFHSDVCDKPLNLYHHLKLYPEDENSSMSAKKPVVVEFYDEIVFPDPSEAFLARLQSHPAVNLPRLPAGLTLPPPVPVEDASKRRKGDTKDHSLSQWFTNFSEADELLQLAAARQQVQAHIAKLRRQINLIDGQHQQFKSSSDQ 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02439 273 ProSiteProfiles YEATS domain profile. 43 187 IPR005033 GO:0006355
Vimu5g02439 273 MobiDBLite consensus disorder prediction 1 26 - -
Vimu5g02439 273 MobiDBLite consensus disorder prediction 195 219 - -
Vimu5g02439 273 FunFam Transcription initiation factor TFIID subunit 14 44 197 - -
Vimu5g02439 273 Coils Coil 236 256 - -
Vimu5g02439 273 Pfam YEATS family 71 150 IPR005033 GO:0006355
Vimu5g02439 273 PANTHER PROTEIN AF-9 HOMOLOG 39 271 IPR005033 GO:0006355
Vimu5g02439 273 MobiDBLite consensus disorder prediction 1 39 - -
Vimu5g02439 273 CDD YEATS_TFIID14_like 49 180 - -
Vimu5g02439 273 Gene3D YEATS domain 44 196 IPR038704 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02439 Vimu-Chr5 34999849 35002810 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02439 K11341 - gmx:100790602 512.686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02439 5 34999849 35002810 Vimu5g02439 5 34999849 35002810 ECH