Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02427 ATGGCTATGGAGGAAGCTGTATCTATGAAACAAGATTTTGATCCTCAAAACAAACCTAAAAGAAACAAGTTTGCGTTAGCTTGTGCCATTTTAGCTTCCATGACTTCAATCTTACTAGGTTATGTCCATGATATTCTTAAAAATACTAAAAGAATTTTAATTACTACAGATATTGGAGTGATGAGTGGAGCAGCTTTGTACATACAACGAGATCTCAGAGTGTCGGATGTGAAAATCGAAATCCTGAATGGTATCATCAACCTCTACTCGCCGGTCGGTTCTTTCATTGCCGGCAGAACATCAGACTGGATAGGTCGGCGCTACACCATTGCGCTCGCCGGCATCATCTTCTTCGCCGGAGCAATCCTCATGGGACTCTCCCCTAACTACGCCTTTCTCATGTTTGGCCGCTTCTTCGCCGGCGTTGGCATCGGCTTCGCCTTCCTCATCGCCCCTGTCTACACCTCCGAAATCTCCCCTACCTCCTCTCGTGGTCTCCTCACATCCTTACCAGAGATATTCCTGAACGGAGGGATTCTGATAGGATACATTTCAAACTATGGATTTTCGAAGATGTCACTTCGGCTGGGATGGCGGCTCATGCTTGGAGTGGGAGCCGTTCCGTCTATGTTTCTAGCCGTGGTAGTGCTAGTTATGCCGGAGTCACCGAGGTGGCTGGTGGCGCAAGGTCGATTAGGCGAAGCCAAAAAAATTCTGTACAAAATCTCCGACTCCGAGGAAGAGGCTCGGCTAAGGCTAGCCGACATAAAAGAGACGGCTGGGATCCCTCAGGACTGCGACGACGACGTCGTATTAGTGAACAAGCAAAGTCACGGGCAAGGTGTATGGAAAGAGCTTTTCCTCCACCCCACGCGCCCGGTTCTCCACATCTTCATCGCGTCGCTTGGGATTCACTTCTTCGCGCAAGCCACGGGCATCGACGCCGTCGTTTTGTACAGCCCGAGAATCTTCAAGAGCGCCGGAATCAAATCCGATAACTACCTTCTGCTGGCGACGGTGGCGGTTGGGTTCGTGAAAACCGTTTCCATTTTGGTTGCCACGTTTTTGTTGGACCGGGCCGGGCGGCGCGTGTTGCTTTTGTGCAGCGTCAGTGGACTGATATTTTCGCTTGTGACACTGGGTGTGAGTCTCACCGTGGTGGGCCATTCTAGGTCGACGCTGACGTGGGCCATTGGGCTTAGCATCGCTGCGGTGTTGGCCTATGTAGCTACATTCTCGATTGGGTCGGGGCCCATCACGTGGGTGTATAGCTCAGAGATTTTCCCGCTTAGGTTGCGCGCTCAGGGCGTGGCTATTGGAGCCATTGTGAATAGGGTGACGAGTGGAGTGATCGCAATGACTTTTCTGTCCCTCTGTAAGGCCATTTCAACCGGGGGTGCTTTTTTTCTCTTCGCCGCCGTCGCTGTTGCTGCGTGGATTTTTCACTACACCATGCTCCCCGAAACACGTGGGAAGACTCTTGAGGAAATTGAAGGCTCTTTCGGTCATTTCTGGAGGAACCCTAAACCCAAAGGACTTTATGGCACTAACGGCGATATCCCCATCAACGAGCAGTGTTAA 1581 0.5117 MAMEEAVSMKQDFDPQNKPKRNKFALACAILASMTSILLGYVHDILKNTKRILITTDIGVMSGAALYIQRDLRVSDVKIEILNGIINLYSPVGSFIAGRTSDWIGRRYTIALAGIIFFAGAILMGLSPNYAFLMFGRFFAGVGIGFAFLIAPVYTSEISPTSSRGLLTSLPEIFLNGGILIGYISNYGFSKMSLRLGWRLMLGVGAVPSMFLAVVVLVMPESPRWLVAQGRLGEAKKILYKISDSEEEARLRLADIKETAGIPQDCDDDVVLVNKQSHGQGVWKELFLHPTRPVLHIFIASLGIHFFAQATGIDAVVLYSPRIFKSAGIKSDNYLLLATVAVGFVKTVSILVATFLLDRAGRRVLLLCSVSGLIFSLVTLGVSLTVVGHSRSTLTWAIGLSIAAVLAYVATFSIGSGPITWVYSSEIFPLRLRAQGVAIGAIVNRVTSGVIAMTFLSLCKAISTGGAFFLFAAVAVAAWIFHYTMLPETRGKTLEEIEGSFGHFWRNPKPKGLYGTNGDIPINEQC 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02427 526 ProSiteProfiles Major facilitator superfamily (MFS) profile. 28 490 IPR020846 GO:0022857
Vimu5g02427 526 FunFam probable polyol transporter 4 18 504 - -
Vimu5g02427 526 PRINTS Sugar transporter signature 308 318 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu5g02427 526 PRINTS Sugar transporter signature 134 153 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu5g02427 526 PRINTS Sugar transporter signature 425 437 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu5g02427 526 PRINTS Sugar transporter signature 402 423 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu5g02427 526 PANTHER SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER 21 506 IPR045262 GO:0015144
Vimu5g02427 526 ProSitePatterns Sugar transport proteins signature 1. 97 114 IPR005829 GO:0016020|GO:0022857|GO:0055085
Vimu5g02427 526 SUPERFAMILY MFS general substrate transporter 53 498 IPR036259 -
Vimu5g02427 526 NCBIfam sugar porter family MFS transporter 15 497 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu5g02427 526 ProSitePatterns Sugar transport proteins signature 2. 139 164 IPR005829 GO:0016020|GO:0022857|GO:0055085
Vimu5g02427 526 Pfam Sugar (and other) transporter 69 499 IPR005828 GO:0016020|GO:0022857|GO:0055085
Vimu5g02427 526 Gene3D MFS general substrate transporter like domains 18 503 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02427 Vimu-Chr5 34932306 34934256 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02427 15 512 Organic Solute Cotransporters AT3G18830 64.143 0.0 658
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02427 - - gmx:100816478 800.816